Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18675 and PFLU_RS18680 are separated by 238 nucleotides PFLU_RS18680 and PFLU_RS18685 overlap by 11 nucleotides PFLU_RS18685 and PFLU_RS18690 are separated by 60 nucleotides
PFLU_RS18675: PFLU_RS18675 - NADH-quinone oxidoreductase subunit NuoN, at 4,227,231 to 4,228,694
_RS18675
PFLU_RS18680: PFLU_RS18680 - toxin, at 4,228,933 to 4,229,283
_RS18680
PFLU_RS18685: PFLU_RS18685 - XRE family transcriptional regulator, at 4,229,273 to 4,229,587
_RS18685
PFLU_RS18690: PFLU_RS18690 - outer membrane beta-barrel protein, at 4,229,648 to 4,230,400
_RS18690
Position (kb) 4228
4229
4230 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4228.221 kb on + strand, within PFLU_RS18675 at 4228.222 kb on - strand, within PFLU_RS18675 at 4228.233 kb on + strand, within PFLU_RS18675 at 4228.233 kb on + strand, within PFLU_RS18675 at 4228.234 kb on - strand, within PFLU_RS18675 at 4228.234 kb on - strand, within PFLU_RS18675 at 4228.507 kb on - strand, within PFLU_RS18675 at 4228.766 kb on + strand at 4228.767 kb on - strand at 4228.777 kb on - strand at 4228.810 kb on + strand at 4228.810 kb on + strand at 4228.811 kb on - strand at 4228.811 kb on - strand at 4228.811 kb on - strand at 4228.821 kb on + strand at 4228.822 kb on - strand at 4228.822 kb on - strand at 4228.840 kb on + strand at 4228.841 kb on - strand at 4228.911 kb on - strand at 4228.943 kb on + strand at 4228.943 kb on + strand at 4228.943 kb on + strand at 4228.943 kb on + strand at 4228.943 kb on + strand at 4228.944 kb on - strand at 4228.947 kb on + strand at 4228.984 kb on + strand, within PFLU_RS18680 at 4228.984 kb on + strand, within PFLU_RS18680 at 4228.984 kb on + strand, within PFLU_RS18680 at 4228.984 kb on + strand, within PFLU_RS18680 at 4228.985 kb on - strand, within PFLU_RS18680 at 4228.985 kb on - strand, within PFLU_RS18680 at 4228.985 kb on - strand, within PFLU_RS18680 at 4229.072 kb on + strand, within PFLU_RS18680 at 4229.073 kb on - strand, within PFLU_RS18680 at 4229.141 kb on - strand, within PFLU_RS18680 at 4229.141 kb on - strand, within PFLU_RS18680 at 4229.141 kb on - strand, within PFLU_RS18680 at 4229.182 kb on + strand, within PFLU_RS18680 at 4229.182 kb on + strand, within PFLU_RS18680 at 4229.183 kb on - strand, within PFLU_RS18680 at 4229.232 kb on - strand, within PFLU_RS18680 at 4229.453 kb on + strand, within PFLU_RS18685 at 4229.453 kb on + strand, within PFLU_RS18685 at 4229.453 kb on + strand, within PFLU_RS18685 at 4229.453 kb on + strand, within PFLU_RS18685 at 4229.453 kb on + strand, within PFLU_RS18685 at 4229.453 kb on + strand, within PFLU_RS18685 at 4229.453 kb on + strand, within PFLU_RS18685 at 4229.454 kb on - strand, within PFLU_RS18685 at 4229.454 kb on - strand, within PFLU_RS18685 at 4229.454 kb on - strand, within PFLU_RS18685 at 4229.454 kb on - strand, within PFLU_RS18685 at 4229.454 kb on - strand, within PFLU_RS18685 at 4229.454 kb on - strand, within PFLU_RS18685 at 4229.454 kb on - strand, within PFLU_RS18685 at 4229.473 kb on + strand, within PFLU_RS18685 at 4229.509 kb on + strand, within PFLU_RS18685 at 4229.509 kb on + strand, within PFLU_RS18685 at 4229.510 kb on - strand, within PFLU_RS18685 at 4229.510 kb on - strand, within PFLU_RS18685 at 4229.510 kb on - strand, within PFLU_RS18685 at 4229.510 kb on - strand, within PFLU_RS18685 at 4229.638 kb on + strand at 4229.638 kb on + strand at 4229.639 kb on - strand at 4229.639 kb on - strand at 4229.639 kb on - strand at 4229.639 kb on - strand at 4229.676 kb on + strand at 4229.733 kb on + strand, within PFLU_RS18690 at 4229.734 kb on - strand, within PFLU_RS18690 at 4229.734 kb on - strand, within PFLU_RS18690 at 4229.748 kb on + strand, within PFLU_RS18690 at 4229.748 kb on + strand, within PFLU_RS18690 at 4229.748 kb on + strand, within PFLU_RS18690 at 4229.748 kb on + strand, within PFLU_RS18690 at 4229.749 kb on - strand, within PFLU_RS18690 at 4229.749 kb on - strand, within PFLU_RS18690 at 4229.749 kb on - strand, within PFLU_RS18690 at 4229.749 kb on - strand, within PFLU_RS18690 at 4229.749 kb on - strand, within PFLU_RS18690 at 4229.751 kb on + strand, within PFLU_RS18690 at 4229.751 kb on + strand, within PFLU_RS18690 at 4229.751 kb on + strand, within PFLU_RS18690 at 4229.751 kb on + strand, within PFLU_RS18690 at 4229.751 kb on + strand, within PFLU_RS18690 at 4229.751 kb on + strand, within PFLU_RS18690 at 4229.751 kb on + strand, within PFLU_RS18690 at 4229.752 kb on - strand, within PFLU_RS18690 at 4229.752 kb on - strand, within PFLU_RS18690 at 4229.752 kb on - strand, within PFLU_RS18690 at 4229.811 kb on + strand, within PFLU_RS18690 at 4229.888 kb on - strand, within PFLU_RS18690 at 4229.943 kb on + strand, within PFLU_RS18690 at 4229.943 kb on + strand, within PFLU_RS18690 at 4229.974 kb on + strand, within PFLU_RS18690 at 4229.974 kb on + strand, within PFLU_RS18690 at 4229.975 kb on - strand, within PFLU_RS18690 at 4229.975 kb on - strand, within PFLU_RS18690 at 4230.031 kb on - strand, within PFLU_RS18690 at 4230.141 kb on + strand, within PFLU_RS18690 at 4230.142 kb on - strand, within PFLU_RS18690 at 4230.165 kb on + strand, within PFLU_RS18690 at 4230.165 kb on + strand, within PFLU_RS18690 at 4230.165 kb on + strand, within PFLU_RS18690 at 4230.166 kb on - strand, within PFLU_RS18690 at 4230.166 kb on - strand, within PFLU_RS18690 at 4230.166 kb on - strand, within PFLU_RS18690 at 4230.207 kb on + strand, within PFLU_RS18690 at 4230.208 kb on - strand, within PFLU_RS18690 at 4230.276 kb on + strand, within PFLU_RS18690 at 4230.276 kb on + strand, within PFLU_RS18690 at 4230.276 kb on + strand, within PFLU_RS18690 at 4230.277 kb on - strand, within PFLU_RS18690 at 4230.277 kb on - strand, within PFLU_RS18690 at 4230.277 kb on - strand, within PFLU_RS18690 at 4230.277 kb on - strand, within PFLU_RS18690 at 4230.277 kb on - strand, within PFLU_RS18690 at 4230.277 kb on - strand, within PFLU_RS18690
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 4,228,221 + PFLU_RS18675 0.68 -1.1 4,228,222 - PFLU_RS18675 0.68 +0.2 4,228,233 + PFLU_RS18675 0.68 +0.2 4,228,233 + PFLU_RS18675 0.68 +0.2 4,228,234 - PFLU_RS18675 0.69 -0.4 4,228,234 - PFLU_RS18675 0.69 +1.2 4,228,507 - PFLU_RS18675 0.87 +0.2 4,228,766 + -1.4 4,228,767 - +1.9 4,228,777 - -2.0 4,228,810 + -0.4 4,228,810 + -1.8 4,228,811 - -0.1 4,228,811 - -1.6 4,228,811 - +0.7 4,228,821 + -0.8 4,228,822 - +0.2 4,228,822 - +1.6 4,228,840 + +2.8 4,228,841 - +2.1 4,228,911 - +0.1 4,228,943 + -0.1 4,228,943 + +1.2 4,228,943 + +2.2 4,228,943 + +0.7 4,228,943 + -0.5 4,228,944 - -2.4 4,228,947 + -1.9 4,228,984 + PFLU_RS18680 0.15 -0.6 4,228,984 + PFLU_RS18680 0.15 +2.8 4,228,984 + PFLU_RS18680 0.15 -0.0 4,228,984 + PFLU_RS18680 0.15 +2.6 4,228,985 - PFLU_RS18680 0.15 +1.2 4,228,985 - PFLU_RS18680 0.15 +1.1 4,228,985 - PFLU_RS18680 0.15 +1.3 4,229,072 + PFLU_RS18680 0.40 +1.6 4,229,073 - PFLU_RS18680 0.40 -2.1 4,229,141 - PFLU_RS18680 0.59 +1.8 4,229,141 - PFLU_RS18680 0.59 +0.1 4,229,141 - PFLU_RS18680 0.59 -0.0 4,229,182 + PFLU_RS18680 0.71 -0.8 4,229,182 + PFLU_RS18680 0.71 +0.8 4,229,183 - PFLU_RS18680 0.71 +0.1 4,229,232 - PFLU_RS18680 0.85 +1.7 4,229,453 + PFLU_RS18685 0.57 +0.2 4,229,453 + PFLU_RS18685 0.57 +0.5 4,229,453 + PFLU_RS18685 0.57 +0.7 4,229,453 + PFLU_RS18685 0.57 -2.5 4,229,453 + PFLU_RS18685 0.57 -1.6 4,229,453 + PFLU_RS18685 0.57 +0.3 4,229,453 + PFLU_RS18685 0.57 +1.7 4,229,454 - PFLU_RS18685 0.57 +0.6 4,229,454 - PFLU_RS18685 0.57 -0.4 4,229,454 - PFLU_RS18685 0.57 -0.0 4,229,454 - PFLU_RS18685 0.57 +1.4 4,229,454 - PFLU_RS18685 0.57 +0.4 4,229,454 - PFLU_RS18685 0.57 -1.8 4,229,454 - PFLU_RS18685 0.57 -2.5 4,229,473 + PFLU_RS18685 0.63 -0.1 4,229,509 + PFLU_RS18685 0.75 +0.4 4,229,509 + PFLU_RS18685 0.75 +1.7 4,229,510 - PFLU_RS18685 0.75 +1.4 4,229,510 - PFLU_RS18685 0.75 +1.6 4,229,510 - PFLU_RS18685 0.75 -0.0 4,229,510 - PFLU_RS18685 0.75 -0.4 4,229,638 + +1.8 4,229,638 + +1.2 4,229,639 - +1.0 4,229,639 - +1.0 4,229,639 - -2.7 4,229,639 - +0.8 4,229,676 + +1.8 4,229,733 + PFLU_RS18690 0.11 +0.2 4,229,734 - PFLU_RS18690 0.11 +0.7 4,229,734 - PFLU_RS18690 0.11 +0.8 4,229,748 + PFLU_RS18690 0.13 -0.0 4,229,748 + PFLU_RS18690 0.13 +0.9 4,229,748 + PFLU_RS18690 0.13 -0.1 4,229,748 + PFLU_RS18690 0.13 -0.3 4,229,749 - PFLU_RS18690 0.13 -0.8 4,229,749 - PFLU_RS18690 0.13 -1.8 4,229,749 - PFLU_RS18690 0.13 -1.4 4,229,749 - PFLU_RS18690 0.13 -2.3 4,229,749 - PFLU_RS18690 0.13 -1.4 4,229,751 + PFLU_RS18690 0.14 -1.1 4,229,751 + PFLU_RS18690 0.14 -0.3 4,229,751 + PFLU_RS18690 0.14 +1.5 4,229,751 + PFLU_RS18690 0.14 +0.2 4,229,751 + PFLU_RS18690 0.14 -0.5 4,229,751 + PFLU_RS18690 0.14 +1.0 4,229,751 + PFLU_RS18690 0.14 -0.3 4,229,752 - PFLU_RS18690 0.14 -2.1 4,229,752 - PFLU_RS18690 0.14 +0.6 4,229,752 - PFLU_RS18690 0.14 -2.1 4,229,811 + PFLU_RS18690 0.22 +0.8 4,229,888 - PFLU_RS18690 0.32 +0.2 4,229,943 + PFLU_RS18690 0.39 -0.8 4,229,943 + PFLU_RS18690 0.39 -1.3 4,229,974 + PFLU_RS18690 0.43 +1.9 4,229,974 + PFLU_RS18690 0.43 +2.2 4,229,975 - PFLU_RS18690 0.43 -1.6 4,229,975 - PFLU_RS18690 0.43 +1.9 4,230,031 - PFLU_RS18690 0.51 -1.1 4,230,141 + PFLU_RS18690 0.65 +0.8 4,230,142 - PFLU_RS18690 0.66 -2.5 4,230,165 + PFLU_RS18690 0.69 +0.8 4,230,165 + PFLU_RS18690 0.69 +2.8 4,230,165 + PFLU_RS18690 0.69 -1.6 4,230,166 - PFLU_RS18690 0.69 +0.2 4,230,166 - PFLU_RS18690 0.69 -1.6 4,230,166 - PFLU_RS18690 0.69 -1.1 4,230,207 + PFLU_RS18690 0.74 +1.5 4,230,208 - PFLU_RS18690 0.74 +3.1 4,230,276 + PFLU_RS18690 0.83 +1.4 4,230,276 + PFLU_RS18690 0.83 -2.6 4,230,276 + PFLU_RS18690 0.83 +0.2 4,230,277 - PFLU_RS18690 0.84 +1.3 4,230,277 - PFLU_RS18690 0.84 +0.1 4,230,277 - PFLU_RS18690 0.84 -0.0 4,230,277 - PFLU_RS18690 0.84 -1.6 4,230,277 - PFLU_RS18690 0.84 +0.9 4,230,277 - PFLU_RS18690 0.84 +2.9
Or see this region's nucleotide sequence