Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18665 and PFLU_RS18670 are separated by 40 nucleotides PFLU_RS18670 and PFLU_RS18675 are separated by 7 nucleotides
PFLU_RS18665: PFLU_RS18665 - NADH-quinone oxidoreductase subunit L, at 4,223,797 to 4,225,650
_RS18665
PFLU_RS18670: PFLU_RS18670 - NADH-quinone oxidoreductase subunit M, at 4,225,691 to 4,227,223
_RS18670
PFLU_RS18675: PFLU_RS18675 - NADH-quinone oxidoreductase subunit NuoN, at 4,227,231 to 4,228,694
_RS18675
Position (kb) 4225
4226
4227
4228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4224.754 kb on + strand, within PFLU_RS18665 at 4224.991 kb on + strand, within PFLU_RS18665 at 4225.049 kb on - strand, within PFLU_RS18665 at 4225.084 kb on + strand, within PFLU_RS18665 at 4225.084 kb on + strand, within PFLU_RS18665 at 4225.085 kb on - strand, within PFLU_RS18665 at 4225.488 kb on + strand at 4225.586 kb on - strand at 4225.652 kb on + strand at 4225.652 kb on + strand at 4225.652 kb on + strand at 4225.652 kb on + strand at 4225.708 kb on - strand at 4225.844 kb on + strand at 4226.144 kb on + strand, within PFLU_RS18670 at 4226.144 kb on + strand, within PFLU_RS18670 at 4226.145 kb on - strand, within PFLU_RS18670 at 4226.305 kb on + strand, within PFLU_RS18670 at 4226.306 kb on - strand, within PFLU_RS18670 at 4226.315 kb on + strand, within PFLU_RS18670 at 4226.358 kb on - strand, within PFLU_RS18670 at 4226.688 kb on - strand, within PFLU_RS18670 at 4226.902 kb on + strand, within PFLU_RS18670 at 4227.106 kb on - strand at 4227.116 kb on + strand at 4227.117 kb on - strand at 4227.221 kb on + strand at 4227.456 kb on + strand, within PFLU_RS18675 at 4227.457 kb on - strand, within PFLU_RS18675 at 4227.457 kb on - strand, within PFLU_RS18675 at 4227.558 kb on + strand, within PFLU_RS18675 at 4227.558 kb on + strand, within PFLU_RS18675 at 4227.559 kb on - strand, within PFLU_RS18675 at 4227.661 kb on - strand, within PFLU_RS18675 at 4227.661 kb on - strand, within PFLU_RS18675 at 4227.675 kb on + strand, within PFLU_RS18675 at 4227.676 kb on - strand, within PFLU_RS18675 at 4227.717 kb on + strand, within PFLU_RS18675 at 4227.717 kb on + strand, within PFLU_RS18675 at 4227.718 kb on - strand, within PFLU_RS18675 at 4228.221 kb on + strand, within PFLU_RS18675 at 4228.222 kb on - strand, within PFLU_RS18675
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 4,224,754 + PFLU_RS18665 0.52 +1.2 4,224,991 + PFLU_RS18665 0.64 +1.2 4,225,049 - PFLU_RS18665 0.68 +2.2 4,225,084 + PFLU_RS18665 0.69 -1.1 4,225,084 + PFLU_RS18665 0.69 -0.4 4,225,085 - PFLU_RS18665 0.69 -2.1 4,225,488 + +1.2 4,225,586 - -0.8 4,225,652 + +0.3 4,225,652 + -3.0 4,225,652 + +0.1 4,225,652 + -1.1 4,225,708 - -0.8 4,225,844 + +1.2 4,226,144 + PFLU_RS18670 0.30 +1.2 4,226,144 + PFLU_RS18670 0.30 -1.1 4,226,145 - PFLU_RS18670 0.30 +2.5 4,226,305 + PFLU_RS18670 0.40 -0.8 4,226,306 - PFLU_RS18670 0.40 -0.8 4,226,315 + PFLU_RS18670 0.41 -0.4 4,226,358 - PFLU_RS18670 0.44 +0.2 4,226,688 - PFLU_RS18670 0.65 -0.8 4,226,902 + PFLU_RS18670 0.79 -0.4 4,227,106 - -1.4 4,227,116 + +1.2 4,227,117 - -0.4 4,227,221 + -2.5 4,227,456 + PFLU_RS18675 0.15 +0.2 4,227,457 - PFLU_RS18675 0.15 +0.2 4,227,457 - PFLU_RS18675 0.15 -0.4 4,227,558 + PFLU_RS18675 0.22 +1.2 4,227,558 + PFLU_RS18675 0.22 +0.2 4,227,559 - PFLU_RS18675 0.22 -2.1 4,227,661 - PFLU_RS18675 0.29 +1.8 4,227,661 - PFLU_RS18675 0.29 -0.8 4,227,675 + PFLU_RS18675 0.30 -0.4 4,227,676 - PFLU_RS18675 0.30 -1.4 4,227,717 + PFLU_RS18675 0.33 +0.2 4,227,717 + PFLU_RS18675 0.33 +1.2 4,227,718 - PFLU_RS18675 0.33 -0.4 4,228,221 + PFLU_RS18675 0.68 -1.1 4,228,222 - PFLU_RS18675 0.68 +0.2
Or see this region's nucleotide sequence