Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14335

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS14330 and PFLU_RS14335 overlap by 4 nucleotidesPFLU_RS14335 and PFLU_RS14340 are separated by 3 nucleotidesPFLU_RS14340 and PFLU_RS14345 overlap by 4 nucleotides PFLU_RS14330: PFLU_RS14330 - ABC transporter ATP-binding protein, at 3,212,873 to 3,214,495 _RS14330 PFLU_RS14335: PFLU_RS14335 - ABC transporter permease, at 3,214,492 to 3,215,391 _RS14335 PFLU_RS14340: PFLU_RS14340 - ABC transporter permease, at 3,215,395 to 3,216,345 _RS14340 PFLU_RS14345: PFLU_RS14345 - ABC transporter substrate-binding protein, at 3,216,342 to 3,217,970 _RS14345 Position (kb) 3214 3215 3216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3213.747 kb on + strand, within PFLU_RS14330at 3213.747 kb on + strand, within PFLU_RS14330at 3213.747 kb on + strand, within PFLU_RS14330at 3213.747 kb on + strand, within PFLU_RS14330at 3213.748 kb on - strand, within PFLU_RS14330at 3213.748 kb on - strand, within PFLU_RS14330at 3213.748 kb on - strand, within PFLU_RS14330at 3213.748 kb on - strand, within PFLU_RS14330at 3213.748 kb on - strand, within PFLU_RS14330at 3213.748 kb on - strand, within PFLU_RS14330at 3214.044 kb on + strand, within PFLU_RS14330at 3214.143 kb on - strand, within PFLU_RS14330at 3214.289 kb on + strand, within PFLU_RS14330at 3214.289 kb on + strand, within PFLU_RS14330at 3214.455 kb on + strandat 3214.455 kb on + strandat 3214.455 kb on + strandat 3214.455 kb on + strandat 3214.484 kb on + strandat 3214.805 kb on + strand, within PFLU_RS14335at 3214.806 kb on - strand, within PFLU_RS14335at 3215.093 kb on + strand, within PFLU_RS14335at 3215.094 kb on - strand, within PFLU_RS14335at 3215.095 kb on + strand, within PFLU_RS14335at 3215.109 kb on - strand, within PFLU_RS14335at 3215.396 kb on + strandat 3215.396 kb on + strandat 3215.396 kb on + strandat 3215.396 kb on + strandat 3215.397 kb on - strandat 3215.397 kb on - strandat 3215.421 kb on + strandat 3215.441 kb on + strandat 3215.702 kb on + strand, within PFLU_RS14340at 3215.717 kb on + strand, within PFLU_RS14340at 3215.717 kb on + strand, within PFLU_RS14340at 3215.717 kb on + strand, within PFLU_RS14340at 3215.717 kb on + strand, within PFLU_RS14340at 3215.718 kb on - strand, within PFLU_RS14340at 3215.718 kb on - strand, within PFLU_RS14340at 3215.718 kb on - strand, within PFLU_RS14340at 3215.718 kb on - strand, within PFLU_RS14340at 3215.963 kb on + strand, within PFLU_RS14340at 3215.963 kb on + strand, within PFLU_RS14340at 3215.963 kb on + strand, within PFLU_RS14340at 3215.964 kb on - strand, within PFLU_RS14340at 3215.964 kb on - strand, within PFLU_RS14340at 3215.964 kb on - strand, within PFLU_RS14340at 3215.964 kb on - strand, within PFLU_RS14340at 3216.079 kb on - strand, within PFLU_RS14340at 3216.134 kb on + strand, within PFLU_RS14340at 3216.134 kb on + strand, within PFLU_RS14340at 3216.134 kb on + strand, within PFLU_RS14340at 3216.164 kb on + strand, within PFLU_RS14340at 3216.164 kb on + strand, within PFLU_RS14340at 3216.164 kb on + strand, within PFLU_RS14340at 3216.165 kb on - strand, within PFLU_RS14340at 3216.167 kb on + strand, within PFLU_RS14340at 3216.167 kb on + strand, within PFLU_RS14340at 3216.168 kb on - strand, within PFLU_RS14340at 3216.263 kb on + strandat 3216.263 kb on + strandat 3216.263 kb on + strandat 3216.264 kb on - strandat 3216.275 kb on + strandat 3216.275 kb on + strandat 3216.275 kb on + strandat 3216.276 kb on - strandat 3216.276 kb on - strandat 3216.276 kb on - strandat 3216.276 kb on - strandat 3216.276 kb on - strandat 3216.276 kb on - strandat 3216.287 kb on + strandat 3216.287 kb on + strandat 3216.288 kb on - strandat 3216.335 kb on + strandat 3216.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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3,213,747 + PFLU_RS14330 0.54 +1.4
3,213,747 + PFLU_RS14330 0.54 -1.2
3,213,747 + PFLU_RS14330 0.54 +0.3
3,213,747 + PFLU_RS14330 0.54 -0.9
3,213,748 - PFLU_RS14330 0.54 +0.5
3,213,748 - PFLU_RS14330 0.54 +1.3
3,213,748 - PFLU_RS14330 0.54 -1.5
3,213,748 - PFLU_RS14330 0.54 -0.9
3,213,748 - PFLU_RS14330 0.54 +2.6
3,213,748 - PFLU_RS14330 0.54 +0.8
3,214,044 + PFLU_RS14330 0.72 +3.0
3,214,143 - PFLU_RS14330 0.78 +1.3
3,214,289 + PFLU_RS14330 0.87 +0.8
3,214,289 + PFLU_RS14330 0.87 -0.5
3,214,455 + -2.4
3,214,455 + -1.2
3,214,455 + -1.5
3,214,455 + -1.2
3,214,484 + -0.5
3,214,805 + PFLU_RS14335 0.35 +0.2
3,214,806 - PFLU_RS14335 0.35 -1.5
3,215,093 + PFLU_RS14335 0.67 -2.4
3,215,094 - PFLU_RS14335 0.67 -1.2
3,215,095 + PFLU_RS14335 0.67 -1.0
3,215,109 - PFLU_RS14335 0.69 +0.8
3,215,396 + -2.2
3,215,396 + +0.8
3,215,396 + +1.6
3,215,396 + -1.5
3,215,397 - -1.2
3,215,397 - -1.8
3,215,421 + -0.2
3,215,441 + -2.4
3,215,702 + PFLU_RS14340 0.32 -2.2
3,215,717 + PFLU_RS14340 0.34 -0.9
3,215,717 + PFLU_RS14340 0.34 +0.4
3,215,717 + PFLU_RS14340 0.34 -0.5
3,215,717 + PFLU_RS14340 0.34 -0.8
3,215,718 - PFLU_RS14340 0.34 +1.6
3,215,718 - PFLU_RS14340 0.34 +1.5
3,215,718 - PFLU_RS14340 0.34 -0.8
3,215,718 - PFLU_RS14340 0.34 +0.3
3,215,963 + PFLU_RS14340 0.60 +1.1
3,215,963 + PFLU_RS14340 0.60 -0.8
3,215,963 + PFLU_RS14340 0.60 -2.2
3,215,964 - PFLU_RS14340 0.60 -1.0
3,215,964 - PFLU_RS14340 0.60 +2.4
3,215,964 - PFLU_RS14340 0.60 +1.0
3,215,964 - PFLU_RS14340 0.60 -2.0
3,216,079 - PFLU_RS14340 0.72 -0.2
3,216,134 + PFLU_RS14340 0.78 +2.0
3,216,134 + PFLU_RS14340 0.78 +0.3
3,216,134 + PFLU_RS14340 0.78 +1.1
3,216,164 + PFLU_RS14340 0.81 +0.4
3,216,164 + PFLU_RS14340 0.81 +2.6
3,216,164 + PFLU_RS14340 0.81 +0.2
3,216,165 - PFLU_RS14340 0.81 +0.1
3,216,167 + PFLU_RS14340 0.81 +0.8
3,216,167 + PFLU_RS14340 0.81 -0.9
3,216,168 - PFLU_RS14340 0.81 -1.8
3,216,263 + +0.8
3,216,263 + -1.4
3,216,263 + +0.5
3,216,264 - -0.2
3,216,275 + +2.1
3,216,275 + -2.4
3,216,275 + +0.0
3,216,276 - +1.0
3,216,276 - -1.3
3,216,276 - -0.8
3,216,276 - +0.6
3,216,276 - -2.0
3,216,276 - +1.7
3,216,287 + +0.8
3,216,287 + +1.2
3,216,288 - -0.3
3,216,335 + +0.5
3,216,363 - -1.2

Or see this region's nucleotide sequence