Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13715

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS13705 and PFLU_RS13710 overlap by 4 nucleotidesPFLU_RS13710 and PFLU_RS13715 overlap by 12 nucleotidesPFLU_RS13715 and PFLU_RS13720 overlap by 4 nucleotides PFLU_RS13705: PFLU_RS13705 - undecaprenyl-diphosphate phosphatase, at 3,100,370 to 3,101,200 _RS13705 PFLU_RS13710: PFLU_RS13710 - DUF1294 domain-containing protein, at 3,101,197 to 3,101,580 _RS13710 PFLU_RS13715: PFLU_RS13715 - MmcQ/YjbR family DNA-binding protein, at 3,101,569 to 3,101,925 _RS13715 PFLU_RS13720: PFLU_RS13720 - LysR family transcriptional regulator, at 3,101,922 to 3,102,830 _RS13720 Position (kb) 3101 3102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3100.618 kb on + strand, within PFLU_RS13705at 3100.643 kb on - strand, within PFLU_RS13705at 3100.691 kb on + strand, within PFLU_RS13705at 3100.691 kb on + strand, within PFLU_RS13705at 3100.691 kb on + strand, within PFLU_RS13705at 3100.691 kb on + strand, within PFLU_RS13705at 3100.691 kb on + strand, within PFLU_RS13705at 3100.692 kb on - strand, within PFLU_RS13705at 3100.692 kb on - strand, within PFLU_RS13705at 3100.692 kb on - strand, within PFLU_RS13705at 3100.973 kb on + strand, within PFLU_RS13705at 3100.974 kb on - strand, within PFLU_RS13705at 3100.974 kb on - strand, within PFLU_RS13705at 3100.988 kb on + strand, within PFLU_RS13705at 3100.988 kb on + strand, within PFLU_RS13705at 3100.988 kb on + strand, within PFLU_RS13705at 3100.989 kb on - strand, within PFLU_RS13705at 3100.989 kb on - strand, within PFLU_RS13705at 3101.050 kb on + strand, within PFLU_RS13705at 3101.051 kb on - strand, within PFLU_RS13705at 3101.105 kb on + strand, within PFLU_RS13705at 3101.105 kb on + strand, within PFLU_RS13705at 3101.105 kb on + strand, within PFLU_RS13705at 3101.105 kb on + strand, within PFLU_RS13705at 3101.105 kb on + strand, within PFLU_RS13705at 3101.106 kb on - strand, within PFLU_RS13705at 3101.106 kb on - strand, within PFLU_RS13705at 3101.106 kb on - strand, within PFLU_RS13705at 3101.106 kb on - strand, within PFLU_RS13705at 3101.106 kb on - strand, within PFLU_RS13705at 3101.106 kb on - strand, within PFLU_RS13705at 3101.106 kb on - strand, within PFLU_RS13705at 3101.314 kb on + strand, within PFLU_RS13710at 3101.347 kb on + strand, within PFLU_RS13710at 3101.400 kb on + strand, within PFLU_RS13710at 3101.400 kb on + strand, within PFLU_RS13710at 3101.400 kb on + strand, within PFLU_RS13710at 3101.488 kb on + strand, within PFLU_RS13710at 3101.488 kb on + strand, within PFLU_RS13710at 3101.488 kb on + strand, within PFLU_RS13710at 3101.489 kb on - strand, within PFLU_RS13710at 3101.489 kb on - strand, within PFLU_RS13710at 3101.489 kb on - strand, within PFLU_RS13710at 3101.489 kb on - strand, within PFLU_RS13710at 3101.489 kb on - strand, within PFLU_RS13710at 3101.489 kb on - strand, within PFLU_RS13710at 3101.578 kb on + strandat 3101.578 kb on + strandat 3101.579 kb on - strandat 3101.579 kb on - strandat 3101.861 kb on + strand, within PFLU_RS13715at 3101.861 kb on + strand, within PFLU_RS13715at 3101.862 kb on - strand, within PFLU_RS13715at 3101.926 kb on - strandat 3101.965 kb on + strandat 3101.965 kb on + strandat 3101.966 kb on - strandat 3101.966 kb on - strandat 3101.966 kb on - strandat 3102.063 kb on + strand, within PFLU_RS13720at 3102.064 kb on - strand, within PFLU_RS13720at 3102.064 kb on - strand, within PFLU_RS13720at 3102.064 kb on - strand, within PFLU_RS13720at 3102.064 kb on - strand, within PFLU_RS13720at 3102.064 kb on - strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.097 kb on + strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.098 kb on - strand, within PFLU_RS13720at 3102.111 kb on + strand, within PFLU_RS13720at 3102.111 kb on + strand, within PFLU_RS13720at 3102.111 kb on + strand, within PFLU_RS13720at 3102.112 kb on - strand, within PFLU_RS13720at 3102.112 kb on - strand, within PFLU_RS13720at 3102.805 kb on + strandat 3102.805 kb on + strandat 3102.805 kb on + strandat 3102.805 kb on + strandat 3102.805 kb on + strandat 3102.805 kb on + strandat 3102.806 kb on - strandat 3102.806 kb on - strandat 3102.806 kb on - strandat 3102.808 kb on + strandat 3102.809 kb on - strandat 3102.809 kb on - strandat 3102.809 kb on - strandat 3102.809 kb on - strandat 3102.809 kb on - strandat 3102.839 kb on + strandat 3102.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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3,100,618 + PFLU_RS13705 0.30 -2.7
3,100,643 - PFLU_RS13705 0.33 +1.1
3,100,691 + PFLU_RS13705 0.39 -2.1
3,100,691 + PFLU_RS13705 0.39 -0.3
3,100,691 + PFLU_RS13705 0.39 -1.5
3,100,691 + PFLU_RS13705 0.39 +1.5
3,100,691 + PFLU_RS13705 0.39 -0.7
3,100,692 - PFLU_RS13705 0.39 +1.2
3,100,692 - PFLU_RS13705 0.39 -0.7
3,100,692 - PFLU_RS13705 0.39 -1.5
3,100,973 + PFLU_RS13705 0.73 +0.3
3,100,974 - PFLU_RS13705 0.73 +0.8
3,100,974 - PFLU_RS13705 0.73 +1.6
3,100,988 + PFLU_RS13705 0.74 -1.7
3,100,988 + PFLU_RS13705 0.74 +2.0
3,100,988 + PFLU_RS13705 0.74 -0.9
3,100,989 - PFLU_RS13705 0.74 -1.5
3,100,989 - PFLU_RS13705 0.74 +0.1
3,101,050 + PFLU_RS13705 0.82 -2.0
3,101,051 - PFLU_RS13705 0.82 +3.7
3,101,105 + PFLU_RS13705 0.88 +0.4
3,101,105 + PFLU_RS13705 0.88 -2.6
3,101,105 + PFLU_RS13705 0.88 +0.4
3,101,105 + PFLU_RS13705 0.88 -1.5
3,101,105 + PFLU_RS13705 0.88 +0.9
3,101,106 - PFLU_RS13705 0.89 -0.7
3,101,106 - PFLU_RS13705 0.89 +2.7
3,101,106 - PFLU_RS13705 0.89 +0.7
3,101,106 - PFLU_RS13705 0.89 -1.7
3,101,106 - PFLU_RS13705 0.89 +2.2
3,101,106 - PFLU_RS13705 0.89 -2.3
3,101,106 - PFLU_RS13705 0.89 +2.3
3,101,314 + PFLU_RS13710 0.30 -0.3
3,101,347 + PFLU_RS13710 0.39 -0.1
3,101,400 + PFLU_RS13710 0.53 -1.0
3,101,400 + PFLU_RS13710 0.53 +4.2
3,101,400 + PFLU_RS13710 0.53 +0.8
3,101,488 + PFLU_RS13710 0.76 -2.1
3,101,488 + PFLU_RS13710 0.76 -0.7
3,101,488 + PFLU_RS13710 0.76 -0.4
3,101,489 - PFLU_RS13710 0.76 -0.3
3,101,489 - PFLU_RS13710 0.76 +1.3
3,101,489 - PFLU_RS13710 0.76 -2.8
3,101,489 - PFLU_RS13710 0.76 -2.0
3,101,489 - PFLU_RS13710 0.76 +1.1
3,101,489 - PFLU_RS13710 0.76 -3.1
3,101,578 + -1.7
3,101,578 + -0.1
3,101,579 - -1.2
3,101,579 - +1.4
3,101,861 + PFLU_RS13715 0.82 -1.1
3,101,861 + PFLU_RS13715 0.82 -1.7
3,101,862 - PFLU_RS13715 0.82 -0.2
3,101,926 - -2.6
3,101,965 + -0.1
3,101,965 + -1.1
3,101,966 - +0.0
3,101,966 - -0.1
3,101,966 - -2.0
3,102,063 + PFLU_RS13720 0.16 -2.0
3,102,064 - PFLU_RS13720 0.16 -1.7
3,102,064 - PFLU_RS13720 0.16 +2.3
3,102,064 - PFLU_RS13720 0.16 -2.1
3,102,064 - PFLU_RS13720 0.16 +0.1
3,102,064 - PFLU_RS13720 0.16 +0.9
3,102,097 + PFLU_RS13720 0.19 -1.5
3,102,097 + PFLU_RS13720 0.19 +0.4
3,102,097 + PFLU_RS13720 0.19 +0.7
3,102,097 + PFLU_RS13720 0.19 -2.3
3,102,097 + PFLU_RS13720 0.19 -3.3
3,102,097 + PFLU_RS13720 0.19 -2.6
3,102,097 + PFLU_RS13720 0.19 +0.6
3,102,097 + PFLU_RS13720 0.19 -2.5
3,102,097 + PFLU_RS13720 0.19 -1.3
3,102,097 + PFLU_RS13720 0.19 -2.0
3,102,097 + PFLU_RS13720 0.19 -2.0
3,102,097 + PFLU_RS13720 0.19 -0.5
3,102,097 + PFLU_RS13720 0.19 +2.4
3,102,098 - PFLU_RS13720 0.19 +0.2
3,102,098 - PFLU_RS13720 0.19 +0.4
3,102,098 - PFLU_RS13720 0.19 +3.0
3,102,098 - PFLU_RS13720 0.19 -3.1
3,102,098 - PFLU_RS13720 0.19 +0.0
3,102,098 - PFLU_RS13720 0.19 +1.4
3,102,098 - PFLU_RS13720 0.19 -2.5
3,102,098 - PFLU_RS13720 0.19 +0.3
3,102,098 - PFLU_RS13720 0.19 -0.7
3,102,098 - PFLU_RS13720 0.19 +2.6
3,102,098 - PFLU_RS13720 0.19 -0.7
3,102,098 - PFLU_RS13720 0.19 +0.0
3,102,098 - PFLU_RS13720 0.19 -1.5
3,102,098 - PFLU_RS13720 0.19 +1.3
3,102,098 - PFLU_RS13720 0.19 +1.1
3,102,111 + PFLU_RS13720 0.21 +0.4
3,102,111 + PFLU_RS13720 0.21 +0.5
3,102,111 + PFLU_RS13720 0.21 -2.1
3,102,112 - PFLU_RS13720 0.21 +0.4
3,102,112 - PFLU_RS13720 0.21 +0.4
3,102,805 + +2.0
3,102,805 + +0.9
3,102,805 + -1.7
3,102,805 + -1.4
3,102,805 + +0.7
3,102,805 + -0.6
3,102,806 - +1.6
3,102,806 - -1.1
3,102,806 - -1.5
3,102,808 + -0.1
3,102,809 - +1.0
3,102,809 - -0.1
3,102,809 - +1.4
3,102,809 - -2.0
3,102,809 - +1.3
3,102,839 + -0.7
3,102,904 + -0.1

Or see this region's nucleotide sequence