Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12175

Experiment: Growth at pH8 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) D-Glucose
2,698,837	+				-1.3
2,698,837	+				+0.3
2,698,837	+				-0.0
2,698,837	+				-0.3
2,698,838	-				+1.7
2,698,838	-				-2.8
2,698,848	-				+0.1
2,698,857	+				+0.4
2,698,857	+				+0.2
2,698,857	+				-0.2
2,698,861	+				+1.7
2,698,861	+				+0.3
2,698,861	+				+0.8
2,698,861	+				+0.1
2,698,861	+				+0.3
2,698,861	+				+1.3
2,698,861	+				+0.1
2,698,861	+				+1.9
2,698,861	+				+0.0
2,698,861	+				+1.5
2,698,862	-				+0.2
2,698,862	-				+0.5
2,698,862	-				+0.6
2,698,862	-				-3.7
2,698,862	-				-0.0
2,698,862	-				-1.3
2,698,862	-				-0.2
2,698,863	+				+0.1
2,698,863	+				-0.1
2,698,863	+				-1.7
2,698,863	+				+0.2
2,698,863	+				-0.9
2,698,863	+				+1.6
2,698,863	+				+1.1
2,698,863	+				-1.9
2,698,863	+				-3.0
2,698,863	+				+0.8
2,698,863	+				-0.9
2,698,864	-				+0.1
2,698,864	-				-1.7
2,698,864	-				+1.5
2,698,864	-				+0.1
2,698,864	-				-2.7
2,698,864	-				+2.7
2,698,864	-				+1.7
2,698,873	+				-1.3
2,698,873	+				-1.7
2,698,873	+				-0.5
2,698,874	-				+2.3
2,698,874	-				+2.6
2,698,874	-				+0.1
2,698,879	+				+0.3
2,698,879	+				-0.4
2,698,886	-				+0.2
2,698,925	-				+4.0
2,699,029	+		PFLU_RS12170	0.33	+0.3
2,699,030	-		PFLU_RS12170	0.34	-1.9
2,699,030	-		PFLU_RS12170	0.34	-2.1
2,699,049	+		PFLU_RS12170	0.38	-2.1
2,699,050	-		PFLU_RS12170	0.39	+2.1
2,699,055	+		PFLU_RS12170	0.40	-2.8
2,699,071	+		PFLU_RS12170	0.44	-2.3
2,699,071	+		PFLU_RS12170	0.44	+1.1
2,699,071	+		PFLU_RS12170	0.44	+0.2
2,699,072	-		PFLU_RS12170	0.44	-1.2
2,699,072	-		PFLU_RS12170	0.44	-0.6
2,699,072	-		PFLU_RS12170	0.44	+0.1
2,699,091	+		PFLU_RS12170	0.49	+0.4
2,699,100	+		PFLU_RS12170	0.51	-1.5
2,699,100	+		PFLU_RS12170	0.51	-0.3
2,699,145	+		PFLU_RS12170	0.63	-1.2
2,699,232	+		PFLU_RS12170	0.85	+0.5
2,699,233	-		PFLU_RS12170	0.85	-1.3
2,699,233	-		PFLU_RS12170	0.85	+0.6
2,699,233	-		PFLU_RS12170	0.85	+0.4
2,699,233	-		PFLU_RS12170	0.85	-1.9
2,699,267	+				+0.8
2,699,267	+				-3.0
2,699,267	+				-1.5
2,699,267	+				-0.5
2,699,268	-				+0.1
2,699,292	+				+0.5
2,699,293	-				+1.3
2,699,298	+				-0.4
2,699,298	+				+1.9
2,699,298	+				-0.3
2,699,298	+				-0.1
2,699,299	-				-0.6
2,699,299	-				-0.5
2,699,299	-				-1.5
2,699,366	+				+1.1
2,699,366	+				-2.6
2,699,366	+				-1.3
2,699,366	+				-1.3
2,699,366	+				-0.6
2,699,367	-				+1.1
2,699,367	-				-0.9
2,699,367	-				+1.1
2,699,369	+				+1.0
2,699,369	+				-2.4
2,699,369	+				+0.1
2,699,369	+				+0.7
2,699,370	-				-0.9
2,699,370	-				+0.6
2,699,373	+				-0.2
2,699,373	+				+0.9
2,699,373	+				+0.5
2,699,373	+				+0.3
2,699,374	-				-2.1
2,699,374	-				-0.1
2,699,374	-				+1.1
2,699,386	+				-0.2
2,699,386	+				-0.5
2,699,387	-				+1.5
2,699,387	-				+0.1
2,699,387	-				+0.1
2,699,397	+				+1.1
2,699,397	+				-2.1
2,699,397	+				-0.5
2,699,397	+				+0.3
2,699,397	+				+1.7
2,699,397	+				-0.7
2,699,397	+				+1.8
2,699,398	-				-1.6
2,699,398	-				+0.1
2,699,398	-				-1.7
2,699,398	-				+1.9
2,699,411	+				-0.2
2,699,426	-				+0.5
2,700,612	+		PFLU_RS12175	0.52	-2.3
2,700,612	+		PFLU_RS12175	0.52	+1.1
2,701,547	-				-0.7
2,701,547	-				-1.5
2,701,752	+				-0.3
2,701,752	+				-1.9
2,701,752	+				+1.3
2,701,752	+				-1.2
2,701,752	+				+1.1
2,701,776	+				+1.6
2,701,776	+				+2.5
2,701,876	-				+0.7
2,701,896	+				-2.1
2,701,962	+				-1.7
2,701,963	-				-2.7
2,701,963	-				-0.0
2,702,013	+				-1.5
2,702,013	+				-1.9
2,702,014	-				-2.2
2,702,054	+		PFLU_RS12180	0.12	-1.2
2,702,054	+		PFLU_RS12180	0.12	-2.6
2,702,054	+		PFLU_RS12180	0.12	+0.3
2,702,054	+		PFLU_RS12180	0.12	-2.2
2,702,054	+		PFLU_RS12180	0.12	-1.6
2,702,057	+		PFLU_RS12180	0.13	-0.7
2,702,057	+		PFLU_RS12180	0.13	-0.9
2,702,058	-		PFLU_RS12180	0.13	+0.5
2,702,058	-		PFLU_RS12180	0.13	-1.2
2,702,063	+		PFLU_RS12180	0.13	-0.1
2,702,120	+		PFLU_RS12180	0.18	+0.8
2,702,120	+		PFLU_RS12180	0.18	+0.8
2,702,120	+		PFLU_RS12180	0.18	+1.6
2,702,120	+		PFLU_RS12180	0.18	+0.2
2,702,121	-		PFLU_RS12180	0.18	+3.8
2,702,121	-		PFLU_RS12180	0.18	-1.2
2,702,121	-		PFLU_RS12180	0.18	+0.1
2,702,121	-		PFLU_RS12180	0.18	+1.2
2,702,227	-		PFLU_RS12180	0.28	+0.8
2,702,236	+		PFLU_RS12180	0.28	+0.5
2,702,237	-		PFLU_RS12180	0.29	+0.9
2,702,237	-		PFLU_RS12180	0.29	-2.2
2,702,237	-		PFLU_RS12180	0.29	-2.2
2,702,237	-		PFLU_RS12180	0.29	+1.0
2,702,237	-		PFLU_RS12180	0.29	+1.1
2,702,261	+		PFLU_RS12180	0.31	+0.7
2,702,262	-		PFLU_RS12180	0.31	+2.1
2,702,262	-		PFLU_RS12180	0.31	-0.9
2,702,313	+		PFLU_RS12180	0.35	-0.2
2,702,313	+		PFLU_RS12180	0.35	-2.1
2,702,314	-		PFLU_RS12180	0.35	+0.1
2,702,314	-		PFLU_RS12180	0.35	+0.8
2,702,314	-		PFLU_RS12180	0.35	+2.1
2,702,350	+		PFLU_RS12180	0.38	+2.0
2,702,350	+		PFLU_RS12180	0.38	-0.5
2,702,456	+		PFLU_RS12180	0.48	+0.5
2,702,456	+		PFLU_RS12180	0.48	+0.2
2,702,456	+		PFLU_RS12180	0.48	-0.5
2,702,456	+		PFLU_RS12180	0.48	+3.2
2,702,457	-		PFLU_RS12180	0.48	+0.1
2,702,457	-		PFLU_RS12180	0.48	+1.3
2,702,457	-		PFLU_RS12180	0.48	-0.1
2,702,457	-		PFLU_RS12180	0.48	-2.2
2,702,457	-		PFLU_RS12180	0.48	+0.1
2,702,457	-		PFLU_RS12180	0.48	+0.6
2,702,457	-		PFLU_RS12180	0.48	+0.8
2,702,457	-		PFLU_RS12180	0.48	-2.1
2,702,458	+		PFLU_RS12180	0.48	+0.4
2,702,458	+		PFLU_RS12180	0.48	-0.3
2,702,458	+		PFLU_RS12180	0.48	-1.6
2,702,459	-		PFLU_RS12180	0.48	+1.3
2,702,459	-		PFLU_RS12180	0.48	-0.2
2,702,459	-		PFLU_RS12180	0.48	-2.8
2,702,459	-		PFLU_RS12180	0.48	+1.7
2,702,459	-		PFLU_RS12180	0.48	+0.3
2,702,459	-		PFLU_RS12180	0.48	+0.5
2,702,459	-		PFLU_RS12180	0.48	+0.4
2,702,459	-		PFLU_RS12180	0.48	+0.8
2,702,469	+		PFLU_RS12180	0.49	+0.1
2,702,469	+		PFLU_RS12180	0.49	-0.2
2,702,469	+		PFLU_RS12180	0.49	+1.8
2,702,469	+		PFLU_RS12180	0.49	+2.5
2,702,470	-		PFLU_RS12180	0.49	-2.6
2,702,496	-		PFLU_RS12180	0.51	-0.7
2,702,496	-		PFLU_RS12180	0.51	-1.7
2,702,501	+		PFLU_RS12180	0.52	-1.1
2,702,501	+		PFLU_RS12180	0.52	-0.1
2,702,502	-		PFLU_RS12180	0.52	+1.9
2,702,502	-		PFLU_RS12180	0.52	+0.5
2,702,520	+		PFLU_RS12180	0.53	+1.5
2,702,520	+		PFLU_RS12180	0.53	-1.5
2,702,520	+		PFLU_RS12180	0.53	+0.6
2,702,520	+		PFLU_RS12180	0.53	-1.1
2,702,521	-		PFLU_RS12180	0.53	-0.5
2,702,521	-		PFLU_RS12180	0.53	-1.2
2,702,521	-		PFLU_RS12180	0.53	+0.1
2,702,521	-		PFLU_RS12180	0.53	-1.2
2,702,524	+		PFLU_RS12180	0.54	+1.9
2,702,525	-		PFLU_RS12180	0.54	-2.5
2,702,525	-		PFLU_RS12180	0.54	+1.8