Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06400

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06395 and PFLU_RS06400 are separated by 8 nucleotidesPFLU_RS06400 and PFLU_RS06405 are separated by 54 nucleotidesPFLU_RS06405 and PFLU_RS06410 overlap by 4 nucleotides PFLU_RS06395: PFLU_RS06395 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 1,433,442 to 1,434,554 _RS06395 PFLU_RS06400: PFLU_RS06400 - S-formylglutathione hydrolase, at 1,434,563 to 1,435,408 _RS06400 PFLU_RS06405: PFLU_RS06405 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,435,463 to 1,435,936 _RS06405 PFLU_RS06410: PFLU_RS06410 - tRNA pseudouridine(13) synthase TruD, at 1,435,933 to 1,436,991 _RS06410 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1433.577 kb on + strand, within PFLU_RS06395at 1433.577 kb on + strand, within PFLU_RS06395at 1433.577 kb on + strand, within PFLU_RS06395at 1433.578 kb on - strand, within PFLU_RS06395at 1433.578 kb on - strand, within PFLU_RS06395at 1433.695 kb on + strand, within PFLU_RS06395at 1433.695 kb on + strand, within PFLU_RS06395at 1433.695 kb on + strand, within PFLU_RS06395at 1433.695 kb on + strand, within PFLU_RS06395at 1433.695 kb on + strand, within PFLU_RS06395at 1433.695 kb on + strand, within PFLU_RS06395at 1433.696 kb on - strand, within PFLU_RS06395at 1433.706 kb on + strand, within PFLU_RS06395at 1433.706 kb on + strand, within PFLU_RS06395at 1433.706 kb on + strand, within PFLU_RS06395at 1433.706 kb on + strand, within PFLU_RS06395at 1433.706 kb on + strand, within PFLU_RS06395at 1433.706 kb on + strand, within PFLU_RS06395at 1433.706 kb on + strand, within PFLU_RS06395at 1433.707 kb on - strand, within PFLU_RS06395at 1433.707 kb on - strand, within PFLU_RS06395at 1433.707 kb on - strand, within PFLU_RS06395at 1433.707 kb on - strand, within PFLU_RS06395at 1433.810 kb on + strand, within PFLU_RS06395at 1433.810 kb on + strand, within PFLU_RS06395at 1433.811 kb on - strand, within PFLU_RS06395at 1433.823 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.847 kb on + strand, within PFLU_RS06395at 1433.848 kb on - strand, within PFLU_RS06395at 1433.848 kb on - strand, within PFLU_RS06395at 1433.848 kb on - strand, within PFLU_RS06395at 1433.848 kb on - strand, within PFLU_RS06395at 1433.874 kb on + strand, within PFLU_RS06395at 1433.875 kb on - strand, within PFLU_RS06395at 1433.912 kb on + strand, within PFLU_RS06395at 1433.912 kb on + strand, within PFLU_RS06395at 1434.053 kb on + strand, within PFLU_RS06395at 1434.054 kb on - strand, within PFLU_RS06395at 1434.054 kb on - strand, within PFLU_RS06395at 1434.054 kb on - strand, within PFLU_RS06395at 1434.165 kb on + strand, within PFLU_RS06395at 1434.165 kb on + strand, within PFLU_RS06395at 1434.166 kb on - strand, within PFLU_RS06395at 1434.166 kb on - strand, within PFLU_RS06395at 1434.233 kb on + strand, within PFLU_RS06395at 1434.233 kb on + strand, within PFLU_RS06395at 1434.233 kb on + strand, within PFLU_RS06395at 1434.233 kb on + strand, within PFLU_RS06395at 1434.233 kb on + strand, within PFLU_RS06395at 1434.234 kb on - strand, within PFLU_RS06395at 1434.234 kb on - strand, within PFLU_RS06395at 1434.234 kb on - strand, within PFLU_RS06395at 1434.234 kb on - strand, within PFLU_RS06395at 1434.234 kb on - strand, within PFLU_RS06395at 1434.234 kb on - strand, within PFLU_RS06395at 1434.420 kb on + strand, within PFLU_RS06395at 1434.420 kb on + strand, within PFLU_RS06395at 1434.420 kb on + strand, within PFLU_RS06395at 1434.420 kb on + strand, within PFLU_RS06395at 1434.421 kb on - strand, within PFLU_RS06395at 1434.421 kb on - strand, within PFLU_RS06395at 1434.421 kb on - strand, within PFLU_RS06395at 1434.421 kb on - strand, within PFLU_RS06395at 1434.421 kb on - strand, within PFLU_RS06395at 1434.421 kb on - strand, within PFLU_RS06395at 1434.610 kb on + strandat 1434.610 kb on + strandat 1434.611 kb on - strandat 1434.617 kb on + strandat 1434.617 kb on + strandat 1434.618 kb on - strandat 1434.618 kb on - strandat 1434.618 kb on - strandat 1434.665 kb on + strand, within PFLU_RS06400at 1434.666 kb on - strand, within PFLU_RS06400at 1434.666 kb on - strand, within PFLU_RS06400at 1434.666 kb on - strand, within PFLU_RS06400at 1434.666 kb on - strand, within PFLU_RS06400at 1434.666 kb on - strand, within PFLU_RS06400at 1434.666 kb on - strand, within PFLU_RS06400at 1434.710 kb on + strand, within PFLU_RS06400at 1434.710 kb on + strand, within PFLU_RS06400at 1434.710 kb on + strand, within PFLU_RS06400at 1434.710 kb on + strand, within PFLU_RS06400at 1434.711 kb on - strand, within PFLU_RS06400at 1434.920 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.935 kb on + strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.936 kb on - strand, within PFLU_RS06400at 1434.988 kb on + strand, within PFLU_RS06400at 1435.061 kb on + strand, within PFLU_RS06400at 1435.137 kb on - strand, within PFLU_RS06400at 1435.332 kb on - strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.343 kb on + strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.344 kb on - strandat 1435.422 kb on + strandat 1435.422 kb on + strandat 1435.422 kb on + strandat 1435.423 kb on - strandat 1435.426 kb on + strandat 1435.426 kb on + strandat 1435.426 kb on + strandat 1435.426 kb on + strandat 1435.426 kb on + strandat 1435.426 kb on + strandat 1435.427 kb on - strandat 1435.427 kb on - strandat 1435.427 kb on - strandat 1435.427 kb on - strandat 1435.427 kb on - strandat 1435.444 kb on + strandat 1435.444 kb on + strandat 1435.966 kb on + strandat 1436.037 kb on + strandat 1436.072 kb on + strand, within PFLU_RS06410at 1436.097 kb on + strand, within PFLU_RS06410at 1436.158 kb on + strand, within PFLU_RS06410at 1436.158 kb on + strand, within PFLU_RS06410at 1436.158 kb on + strand, within PFLU_RS06410at 1436.158 kb on + strand, within PFLU_RS06410at 1436.158 kb on + strand, within PFLU_RS06410at 1436.158 kb on + strand, within PFLU_RS06410at 1436.158 kb on + strand, within PFLU_RS06410at 1436.159 kb on - strand, within PFLU_RS06410at 1436.159 kb on - strand, within PFLU_RS06410at 1436.159 kb on - strand, within PFLU_RS06410at 1436.159 kb on - strand, within PFLU_RS06410at 1436.159 kb on - strand, within PFLU_RS06410at 1436.213 kb on + strand, within PFLU_RS06410at 1436.213 kb on + strand, within PFLU_RS06410

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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1,433,577 + PFLU_RS06395 0.12 -0.4
1,433,577 + PFLU_RS06395 0.12 -1.5
1,433,577 + PFLU_RS06395 0.12 -1.4
1,433,578 - PFLU_RS06395 0.12 +1.3
1,433,578 - PFLU_RS06395 0.12 +0.5
1,433,695 + PFLU_RS06395 0.23 +1.1
1,433,695 + PFLU_RS06395 0.23 +2.3
1,433,695 + PFLU_RS06395 0.23 +0.7
1,433,695 + PFLU_RS06395 0.23 +0.1
1,433,695 + PFLU_RS06395 0.23 -1.8
1,433,695 + PFLU_RS06395 0.23 +0.5
1,433,696 - PFLU_RS06395 0.23 +1.6
1,433,706 + PFLU_RS06395 0.24 +0.6
1,433,706 + PFLU_RS06395 0.24 +0.0
1,433,706 + PFLU_RS06395 0.24 +0.6
1,433,706 + PFLU_RS06395 0.24 +1.5
1,433,706 + PFLU_RS06395 0.24 -0.4
1,433,706 + PFLU_RS06395 0.24 +0.8
1,433,706 + PFLU_RS06395 0.24 +0.0
1,433,707 - PFLU_RS06395 0.24 -1.9
1,433,707 - PFLU_RS06395 0.24 +2.6
1,433,707 - PFLU_RS06395 0.24 +1.6
1,433,707 - PFLU_RS06395 0.24 +0.0
1,433,810 + PFLU_RS06395 0.33 +1.6
1,433,810 + PFLU_RS06395 0.33 -0.7
1,433,811 - PFLU_RS06395 0.33 +0.2
1,433,823 + PFLU_RS06395 0.34 -0.8
1,433,847 + PFLU_RS06395 0.36 +2.1
1,433,847 + PFLU_RS06395 0.36 +1.6
1,433,847 + PFLU_RS06395 0.36 +1.3
1,433,847 + PFLU_RS06395 0.36 -1.3
1,433,847 + PFLU_RS06395 0.36 +0.0
1,433,847 + PFLU_RS06395 0.36 -2.3
1,433,847 + PFLU_RS06395 0.36 -1.2
1,433,847 + PFLU_RS06395 0.36 -0.7
1,433,847 + PFLU_RS06395 0.36 +0.5
1,433,848 - PFLU_RS06395 0.36 -0.7
1,433,848 - PFLU_RS06395 0.36 -1.2
1,433,848 - PFLU_RS06395 0.36 -0.8
1,433,848 - PFLU_RS06395 0.36 -0.2
1,433,874 + PFLU_RS06395 0.39 -0.6
1,433,875 - PFLU_RS06395 0.39 +3.2
1,433,912 + PFLU_RS06395 0.42 +0.7
1,433,912 + PFLU_RS06395 0.42 +1.4
1,434,053 + PFLU_RS06395 0.55 +3.0
1,434,054 - PFLU_RS06395 0.55 +1.1
1,434,054 - PFLU_RS06395 0.55 -0.4
1,434,054 - PFLU_RS06395 0.55 -1.5
1,434,165 + PFLU_RS06395 0.65 +2.1
1,434,165 + PFLU_RS06395 0.65 +1.2
1,434,166 - PFLU_RS06395 0.65 +1.6
1,434,166 - PFLU_RS06395 0.65 +0.6
1,434,233 + PFLU_RS06395 0.71 +0.1
1,434,233 + PFLU_RS06395 0.71 +0.4
1,434,233 + PFLU_RS06395 0.71 -0.5
1,434,233 + PFLU_RS06395 0.71 -1.9
1,434,233 + PFLU_RS06395 0.71 +0.2
1,434,234 - PFLU_RS06395 0.71 -0.7
1,434,234 - PFLU_RS06395 0.71 +0.9
1,434,234 - PFLU_RS06395 0.71 +0.2
1,434,234 - PFLU_RS06395 0.71 +1.3
1,434,234 - PFLU_RS06395 0.71 +0.1
1,434,234 - PFLU_RS06395 0.71 -1.2
1,434,420 + PFLU_RS06395 0.88 -0.4
1,434,420 + PFLU_RS06395 0.88 -2.5
1,434,420 + PFLU_RS06395 0.88 -0.7
1,434,420 + PFLU_RS06395 0.88 +0.6
1,434,421 - PFLU_RS06395 0.88 -1.8
1,434,421 - PFLU_RS06395 0.88 -2.2
1,434,421 - PFLU_RS06395 0.88 +2.5
1,434,421 - PFLU_RS06395 0.88 +2.4
1,434,421 - PFLU_RS06395 0.88 -2.2
1,434,421 - PFLU_RS06395 0.88 -2.1
1,434,610 + +0.7
1,434,610 + -1.2
1,434,611 - +1.3
1,434,617 + -0.7
1,434,617 + -0.6
1,434,618 - +1.1
1,434,618 - -2.6
1,434,618 - +0.0
1,434,665 + PFLU_RS06400 0.12 +0.5
1,434,666 - PFLU_RS06400 0.12 -0.8
1,434,666 - PFLU_RS06400 0.12 -2.6
1,434,666 - PFLU_RS06400 0.12 +1.3
1,434,666 - PFLU_RS06400 0.12 +0.5
1,434,666 - PFLU_RS06400 0.12 -2.4
1,434,666 - PFLU_RS06400 0.12 +0.0
1,434,710 + PFLU_RS06400 0.17 +0.0
1,434,710 + PFLU_RS06400 0.17 +1.2
1,434,710 + PFLU_RS06400 0.17 +0.0
1,434,710 + PFLU_RS06400 0.17 +1.1
1,434,711 - PFLU_RS06400 0.17 +1.3
1,434,920 + PFLU_RS06400 0.42 +0.4
1,434,935 + PFLU_RS06400 0.44 +1.6
1,434,935 + PFLU_RS06400 0.44 +0.0
1,434,935 + PFLU_RS06400 0.44 +0.5
1,434,935 + PFLU_RS06400 0.44 -0.7
1,434,935 + PFLU_RS06400 0.44 +0.8
1,434,935 + PFLU_RS06400 0.44 -2.5
1,434,935 + PFLU_RS06400 0.44 +1.6
1,434,935 + PFLU_RS06400 0.44 +0.3
1,434,936 - PFLU_RS06400 0.44 +0.5
1,434,936 - PFLU_RS06400 0.44 +0.2
1,434,936 - PFLU_RS06400 0.44 -0.3
1,434,936 - PFLU_RS06400 0.44 -1.8
1,434,936 - PFLU_RS06400 0.44 -0.2
1,434,936 - PFLU_RS06400 0.44 +0.0
1,434,936 - PFLU_RS06400 0.44 +1.0
1,434,936 - PFLU_RS06400 0.44 -1.5
1,434,936 - PFLU_RS06400 0.44 +0.3
1,434,936 - PFLU_RS06400 0.44 -0.8
1,434,936 - PFLU_RS06400 0.44 +1.6
1,434,936 - PFLU_RS06400 0.44 +1.0
1,434,936 - PFLU_RS06400 0.44 -1.0
1,434,936 - PFLU_RS06400 0.44 +1.3
1,434,988 + PFLU_RS06400 0.50 -0.4
1,435,061 + PFLU_RS06400 0.59 -0.9
1,435,137 - PFLU_RS06400 0.68 +0.4
1,435,332 - +2.2
1,435,343 + +1.1
1,435,343 + +1.4
1,435,343 + +0.6
1,435,343 + +0.7
1,435,343 + -0.1
1,435,343 + +1.6
1,435,343 + -1.3
1,435,343 + -2.3
1,435,343 + -2.0
1,435,344 - +0.6
1,435,344 - +3.4
1,435,344 - +0.6
1,435,344 - -0.3
1,435,344 - -0.4
1,435,344 - -1.2
1,435,344 - -1.5
1,435,344 - +1.6
1,435,344 - -0.8
1,435,344 - -1.2
1,435,344 - -0.7
1,435,344 - -0.3
1,435,344 - -1.4
1,435,344 - -0.3
1,435,344 - -0.4
1,435,344 - +1.3
1,435,344 - -0.4
1,435,344 - +0.2
1,435,344 - +0.6
1,435,422 + +0.6
1,435,422 + -1.0
1,435,422 + +0.4
1,435,423 - +0.7
1,435,426 + -0.2
1,435,426 + -1.0
1,435,426 + -0.3
1,435,426 + +1.0
1,435,426 + +0.2
1,435,426 + +0.0
1,435,427 - +0.5
1,435,427 - +0.5
1,435,427 - -0.8
1,435,427 - +2.1
1,435,427 - -2.1
1,435,444 + +0.0
1,435,444 + +1.2
1,435,966 + +0.0
1,436,037 + -2.1
1,436,072 + PFLU_RS06410 0.13 -0.4
1,436,097 + PFLU_RS06410 0.15 -1.7
1,436,158 + PFLU_RS06410 0.21 -1.0
1,436,158 + PFLU_RS06410 0.21 +0.2
1,436,158 + PFLU_RS06410 0.21 -1.5
1,436,158 + PFLU_RS06410 0.21 -0.1
1,436,158 + PFLU_RS06410 0.21 -2.2
1,436,158 + PFLU_RS06410 0.21 +0.9
1,436,158 + PFLU_RS06410 0.21 -0.8
1,436,159 - PFLU_RS06410 0.21 +1.0
1,436,159 - PFLU_RS06410 0.21 -1.0
1,436,159 - PFLU_RS06410 0.21 -1.5
1,436,159 - PFLU_RS06410 0.21 +0.5
1,436,159 - PFLU_RS06410 0.21 +1.5
1,436,213 + PFLU_RS06410 0.26 +1.0
1,436,213 + PFLU_RS06410 0.26 +0.1

Or see this region's nucleotide sequence