Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS03610

Experiment: Growth at pH8 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03605 and PFLU_RS03610 are separated by 301 nucleotidesPFLU_RS03610 and PFLU_RS03615 are separated by 21 nucleotidesPFLU_RS03615 and PFLU_RS03620 are separated by 168 nucleotides PFLU_RS03605: PFLU_RS03605 - sigma-54-dependent Fis family transcriptional regulator, at 829,441 to 830,358 _RS03605 PFLU_RS03610: PFLU_RS03610 - redox-regulated ATPase YchF, at 830,660 to 831,760 _RS03610 PFLU_RS03615: PFLU_RS03615 - aminoacyl-tRNA hydrolase, at 831,782 to 832,366 _RS03615 PFLU_RS03620: PFLU_RS03620 - 50S ribosomal protein L25/general stress protein Ctc, at 832,535 to 833,137 _RS03620 Position (kb) 830 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 829.702 kb on + strand, within PFLU_RS03605at 829.714 kb on + strand, within PFLU_RS03605at 829.714 kb on + strand, within PFLU_RS03605at 829.714 kb on + strand, within PFLU_RS03605at 829.715 kb on - strand, within PFLU_RS03605at 829.715 kb on - strand, within PFLU_RS03605at 829.715 kb on - strand, within PFLU_RS03605at 829.715 kb on - strand, within PFLU_RS03605at 829.739 kb on + strand, within PFLU_RS03605at 829.740 kb on - strand, within PFLU_RS03605at 829.749 kb on + strand, within PFLU_RS03605at 829.749 kb on + strand, within PFLU_RS03605at 829.750 kb on - strand, within PFLU_RS03605at 829.795 kb on + strand, within PFLU_RS03605at 829.796 kb on - strand, within PFLU_RS03605at 829.796 kb on - strand, within PFLU_RS03605at 829.797 kb on + strand, within PFLU_RS03605at 829.797 kb on + strand, within PFLU_RS03605at 829.797 kb on + strand, within PFLU_RS03605at 829.797 kb on + strand, within PFLU_RS03605at 829.797 kb on + strand, within PFLU_RS03605at 829.797 kb on + strand, within PFLU_RS03605at 829.797 kb on + strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.798 kb on - strand, within PFLU_RS03605at 829.856 kb on + strand, within PFLU_RS03605at 829.856 kb on + strand, within PFLU_RS03605at 829.896 kb on - strand, within PFLU_RS03605at 829.897 kb on + strand, within PFLU_RS03605at 829.933 kb on + strand, within PFLU_RS03605at 829.933 kb on + strand, within PFLU_RS03605at 829.933 kb on + strand, within PFLU_RS03605at 829.934 kb on - strand, within PFLU_RS03605at 829.934 kb on - strand, within PFLU_RS03605at 829.941 kb on + strand, within PFLU_RS03605at 829.942 kb on - strand, within PFLU_RS03605at 829.942 kb on - strand, within PFLU_RS03605at 829.993 kb on + strand, within PFLU_RS03605at 829.993 kb on + strand, within PFLU_RS03605at 829.993 kb on + strand, within PFLU_RS03605at 829.993 kb on + strand, within PFLU_RS03605at 829.993 kb on + strand, within PFLU_RS03605at 829.994 kb on - strand, within PFLU_RS03605at 830.039 kb on + strand, within PFLU_RS03605at 830.039 kb on + strand, within PFLU_RS03605at 830.040 kb on - strand, within PFLU_RS03605at 830.040 kb on - strand, within PFLU_RS03605at 830.050 kb on + strand, within PFLU_RS03605at 830.050 kb on + strand, within PFLU_RS03605at 830.050 kb on + strand, within PFLU_RS03605at 830.050 kb on + strand, within PFLU_RS03605at 830.050 kb on + strand, within PFLU_RS03605at 830.051 kb on - strand, within PFLU_RS03605at 830.051 kb on - strand, within PFLU_RS03605at 830.051 kb on - strand, within PFLU_RS03605at 830.051 kb on - strand, within PFLU_RS03605at 830.051 kb on - strand, within PFLU_RS03605at 830.051 kb on - strand, within PFLU_RS03605at 830.051 kb on - strand, within PFLU_RS03605at 830.067 kb on + strand, within PFLU_RS03605at 830.068 kb on - strand, within PFLU_RS03605at 830.086 kb on + strand, within PFLU_RS03605at 830.086 kb on + strand, within PFLU_RS03605at 830.086 kb on + strand, within PFLU_RS03605at 830.086 kb on + strand, within PFLU_RS03605at 830.086 kb on + strand, within PFLU_RS03605at 830.086 kb on + strand, within PFLU_RS03605at 830.086 kb on + strand, within PFLU_RS03605at 830.087 kb on - strand, within PFLU_RS03605at 830.087 kb on - strand, within PFLU_RS03605at 830.087 kb on - strand, within PFLU_RS03605at 830.087 kb on - strand, within PFLU_RS03605at 830.087 kb on - strand, within PFLU_RS03605at 830.087 kb on - strand, within PFLU_RS03605at 830.097 kb on + strand, within PFLU_RS03605at 830.097 kb on + strand, within PFLU_RS03605at 830.097 kb on + strand, within PFLU_RS03605at 830.097 kb on + strand, within PFLU_RS03605at 830.097 kb on + strand, within PFLU_RS03605at 830.097 kb on + strand, within PFLU_RS03605at 830.097 kb on + strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.098 kb on - strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.099 kb on + strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.100 kb on - strand, within PFLU_RS03605at 830.194 kb on + strand, within PFLU_RS03605at 830.256 kb on + strand, within PFLU_RS03605at 830.256 kb on + strand, within PFLU_RS03605at 830.256 kb on + strand, within PFLU_RS03605at 830.257 kb on - strand, within PFLU_RS03605at 830.260 kb on + strand, within PFLU_RS03605at 830.260 kb on + strand, within PFLU_RS03605at 830.260 kb on + strand, within PFLU_RS03605at 830.260 kb on + strand, within PFLU_RS03605at 830.261 kb on - strand, within PFLU_RS03605at 830.261 kb on - strand, within PFLU_RS03605at 830.261 kb on - strand, within PFLU_RS03605at 830.261 kb on - strand, within PFLU_RS03605at 830.263 kb on - strand, within PFLU_RS03605at 830.287 kb on + strandat 830.288 kb on - strandat 830.288 kb on - strandat 830.323 kb on - strandat 830.341 kb on - strandat 830.402 kb on + strandat 830.403 kb on - strandat 830.416 kb on + strandat 830.416 kb on + strandat 830.477 kb on - strandat 830.523 kb on - strandat 830.525 kb on - strandat 830.537 kb on - strandat 830.654 kb on + strandat 830.661 kb on + strandat 830.706 kb on + strandat 830.706 kb on + strandat 830.707 kb on - strandat 830.707 kb on - strandat 830.707 kb on - strandat 830.781 kb on + strand, within PFLU_RS03610at 830.907 kb on + strand, within PFLU_RS03610at 830.907 kb on + strand, within PFLU_RS03610at 830.908 kb on - strand, within PFLU_RS03610at 830.908 kb on - strand, within PFLU_RS03610at 830.908 kb on - strand, within PFLU_RS03610at 830.908 kb on - strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.144 kb on + strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.145 kb on - strand, within PFLU_RS03610at 831.202 kb on + strand, within PFLU_RS03610at 831.503 kb on + strand, within PFLU_RS03610at 831.504 kb on - strand, within PFLU_RS03610at 831.574 kb on + strand, within PFLU_RS03610at 831.574 kb on + strand, within PFLU_RS03610at 831.575 kb on - strand, within PFLU_RS03610at 831.575 kb on - strand, within PFLU_RS03610at 831.626 kb on - strand, within PFLU_RS03610at 831.626 kb on - strand, within PFLU_RS03610

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose
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829,702 + PFLU_RS03605 0.28 +0.7
829,714 + PFLU_RS03605 0.30 -0.0
829,714 + PFLU_RS03605 0.30 +0.7
829,714 + PFLU_RS03605 0.30 -0.5
829,715 - PFLU_RS03605 0.30 +2.2
829,715 - PFLU_RS03605 0.30 +1.8
829,715 - PFLU_RS03605 0.30 -1.4
829,715 - PFLU_RS03605 0.30 -0.4
829,739 + PFLU_RS03605 0.32 -0.4
829,740 - PFLU_RS03605 0.33 +0.9
829,749 + PFLU_RS03605 0.34 +0.3
829,749 + PFLU_RS03605 0.34 -0.9
829,750 - PFLU_RS03605 0.34 -1.5
829,795 + PFLU_RS03605 0.39 +1.1
829,796 - PFLU_RS03605 0.39 +1.3
829,796 - PFLU_RS03605 0.39 +1.0
829,797 + PFLU_RS03605 0.39 -1.8
829,797 + PFLU_RS03605 0.39 +1.5
829,797 + PFLU_RS03605 0.39 +2.1
829,797 + PFLU_RS03605 0.39 -0.3
829,797 + PFLU_RS03605 0.39 -0.5
829,797 + PFLU_RS03605 0.39 -1.0
829,797 + PFLU_RS03605 0.39 -2.7
829,798 - PFLU_RS03605 0.39 -1.3
829,798 - PFLU_RS03605 0.39 -1.1
829,798 - PFLU_RS03605 0.39 +0.3
829,798 - PFLU_RS03605 0.39 +0.8
829,798 - PFLU_RS03605 0.39 +0.1
829,798 - PFLU_RS03605 0.39 -1.1
829,798 - PFLU_RS03605 0.39 +0.1
829,798 - PFLU_RS03605 0.39 -0.7
829,856 + PFLU_RS03605 0.45 +2.3
829,856 + PFLU_RS03605 0.45 -1.7
829,896 - PFLU_RS03605 0.50 +2.1
829,897 + PFLU_RS03605 0.50 +1.8
829,933 + PFLU_RS03605 0.54 +1.1
829,933 + PFLU_RS03605 0.54 -0.7
829,933 + PFLU_RS03605 0.54 -1.3
829,934 - PFLU_RS03605 0.54 -2.3
829,934 - PFLU_RS03605 0.54 -2.3
829,941 + PFLU_RS03605 0.54 +1.5
829,942 - PFLU_RS03605 0.55 -0.1
829,942 - PFLU_RS03605 0.55 -1.1
829,993 + PFLU_RS03605 0.60 +2.9
829,993 + PFLU_RS03605 0.60 -1.4
829,993 + PFLU_RS03605 0.60 +0.0
829,993 + PFLU_RS03605 0.60 -0.2
829,993 + PFLU_RS03605 0.60 -0.4
829,994 - PFLU_RS03605 0.60 -1.7
830,039 + PFLU_RS03605 0.65 +1.2
830,039 + PFLU_RS03605 0.65 -0.7
830,040 - PFLU_RS03605 0.65 -0.9
830,040 - PFLU_RS03605 0.65 -1.1
830,050 + PFLU_RS03605 0.66 +0.3
830,050 + PFLU_RS03605 0.66 -2.5
830,050 + PFLU_RS03605 0.66 -0.8
830,050 + PFLU_RS03605 0.66 -1.4
830,050 + PFLU_RS03605 0.66 +0.3
830,051 - PFLU_RS03605 0.66 +0.5
830,051 - PFLU_RS03605 0.66 -1.3
830,051 - PFLU_RS03605 0.66 +1.4
830,051 - PFLU_RS03605 0.66 -0.1
830,051 - PFLU_RS03605 0.66 -1.4
830,051 - PFLU_RS03605 0.66 -2.4
830,051 - PFLU_RS03605 0.66 +0.7
830,067 + PFLU_RS03605 0.68 -1.4
830,068 - PFLU_RS03605 0.68 -1.5
830,086 + PFLU_RS03605 0.70 -3.0
830,086 + PFLU_RS03605 0.70 -0.4
830,086 + PFLU_RS03605 0.70 +1.6
830,086 + PFLU_RS03605 0.70 +1.1
830,086 + PFLU_RS03605 0.70 +1.9
830,086 + PFLU_RS03605 0.70 +1.0
830,086 + PFLU_RS03605 0.70 +2.0
830,087 - PFLU_RS03605 0.70 -0.7
830,087 - PFLU_RS03605 0.70 +0.3
830,087 - PFLU_RS03605 0.70 -0.1
830,087 - PFLU_RS03605 0.70 -0.4
830,087 - PFLU_RS03605 0.70 +0.6
830,087 - PFLU_RS03605 0.70 -0.9
830,097 + PFLU_RS03605 0.71 +0.7
830,097 + PFLU_RS03605 0.71 -1.5
830,097 + PFLU_RS03605 0.71 +1.6
830,097 + PFLU_RS03605 0.71 +1.2
830,097 + PFLU_RS03605 0.71 -2.3
830,097 + PFLU_RS03605 0.71 +0.5
830,097 + PFLU_RS03605 0.71 -0.7
830,098 - PFLU_RS03605 0.72 +0.1
830,098 - PFLU_RS03605 0.72 -0.5
830,098 - PFLU_RS03605 0.72 +0.9
830,098 - PFLU_RS03605 0.72 +0.5
830,098 - PFLU_RS03605 0.72 -2.1
830,098 - PFLU_RS03605 0.72 -1.8
830,098 - PFLU_RS03605 0.72 +0.1
830,098 - PFLU_RS03605 0.72 +2.8
830,099 + PFLU_RS03605 0.72 -1.8
830,099 + PFLU_RS03605 0.72 -1.5
830,099 + PFLU_RS03605 0.72 +2.2
830,099 + PFLU_RS03605 0.72 -0.8
830,099 + PFLU_RS03605 0.72 +0.2
830,099 + PFLU_RS03605 0.72 +0.7
830,099 + PFLU_RS03605 0.72 -0.1
830,099 + PFLU_RS03605 0.72 -0.7
830,099 + PFLU_RS03605 0.72 -0.5
830,099 + PFLU_RS03605 0.72 +2.0
830,099 + PFLU_RS03605 0.72 -1.0
830,100 - PFLU_RS03605 0.72 -0.1
830,100 - PFLU_RS03605 0.72 -2.3
830,100 - PFLU_RS03605 0.72 -1.1
830,100 - PFLU_RS03605 0.72 -1.9
830,100 - PFLU_RS03605 0.72 -1.5
830,100 - PFLU_RS03605 0.72 -1.8
830,100 - PFLU_RS03605 0.72 -0.9
830,100 - PFLU_RS03605 0.72 +0.5
830,100 - PFLU_RS03605 0.72 +0.3
830,100 - PFLU_RS03605 0.72 +0.2
830,100 - PFLU_RS03605 0.72 -0.4
830,194 + PFLU_RS03605 0.82 +0.9
830,256 + PFLU_RS03605 0.89 +0.3
830,256 + PFLU_RS03605 0.89 -1.3
830,256 + PFLU_RS03605 0.89 +0.4
830,257 - PFLU_RS03605 0.89 +1.1
830,260 + PFLU_RS03605 0.89 +1.0
830,260 + PFLU_RS03605 0.89 +0.8
830,260 + PFLU_RS03605 0.89 -0.1
830,260 + PFLU_RS03605 0.89 +0.1
830,261 - PFLU_RS03605 0.89 +1.3
830,261 - PFLU_RS03605 0.89 +2.5
830,261 - PFLU_RS03605 0.89 +0.3
830,261 - PFLU_RS03605 0.89 -2.3
830,263 - PFLU_RS03605 0.90 -2.0
830,287 + +1.1
830,288 - +0.6
830,288 - -0.1
830,323 - +2.2
830,341 - -2.8
830,402 + +0.0
830,403 - -0.9
830,416 + -1.8
830,416 + +1.6
830,477 - +2.5
830,523 - -0.3
830,525 - +0.3
830,537 - +1.3
830,654 + -1.3
830,661 + +0.1
830,706 + -1.8
830,706 + +0.5
830,707 - -0.9
830,707 - -1.8
830,707 - -1.1
830,781 + PFLU_RS03610 0.11 -0.9
830,907 + PFLU_RS03610 0.22 -1.5
830,907 + PFLU_RS03610 0.22 +2.5
830,908 - PFLU_RS03610 0.23 -0.7
830,908 - PFLU_RS03610 0.23 +0.2
830,908 - PFLU_RS03610 0.23 -0.1
830,908 - PFLU_RS03610 0.23 +0.8
831,144 + PFLU_RS03610 0.44 +0.9
831,144 + PFLU_RS03610 0.44 -1.3
831,144 + PFLU_RS03610 0.44 -2.7
831,144 + PFLU_RS03610 0.44 -1.1
831,144 + PFLU_RS03610 0.44 +2.6
831,144 + PFLU_RS03610 0.44 +0.7
831,144 + PFLU_RS03610 0.44 -0.9
831,144 + PFLU_RS03610 0.44 -1.8
831,144 + PFLU_RS03610 0.44 -2.1
831,144 + PFLU_RS03610 0.44 +0.8
831,144 + PFLU_RS03610 0.44 -0.9
831,144 + PFLU_RS03610 0.44 +0.3
831,144 + PFLU_RS03610 0.44 -1.7
831,144 + PFLU_RS03610 0.44 +1.1
831,144 + PFLU_RS03610 0.44 -1.1
831,145 - PFLU_RS03610 0.44 +0.3
831,145 - PFLU_RS03610 0.44 +0.3
831,145 - PFLU_RS03610 0.44 -0.4
831,145 - PFLU_RS03610 0.44 -1.1
831,145 - PFLU_RS03610 0.44 -2.8
831,145 - PFLU_RS03610 0.44 +1.9
831,145 - PFLU_RS03610 0.44 -0.5
831,145 - PFLU_RS03610 0.44 -1.8
831,145 - PFLU_RS03610 0.44 -0.9
831,145 - PFLU_RS03610 0.44 -0.4
831,145 - PFLU_RS03610 0.44 -1.3
831,145 - PFLU_RS03610 0.44 +0.5
831,145 - PFLU_RS03610 0.44 -1.1
831,202 + PFLU_RS03610 0.49 +1.9
831,503 + PFLU_RS03610 0.77 -1.4
831,504 - PFLU_RS03610 0.77 +1.9
831,574 + PFLU_RS03610 0.83 -0.7
831,574 + PFLU_RS03610 0.83 -1.1
831,575 - PFLU_RS03610 0.83 -1.1
831,575 - PFLU_RS03610 0.83 -1.1
831,626 - PFLU_RS03610 0.88 -1.1
831,626 - PFLU_RS03610 0.88 -1.3

Or see this region's nucleotide sequence