Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01960 and PFLU_RS01965 are separated by 37 nucleotides PFLU_RS01965 and PFLU_RS01970 are separated by 257 nucleotides PFLU_RS01970 and PFLU_RS01975 are separated by 1 nucleotides
PFLU_RS01960: PFLU_RS01960 - ATP-dependent protease ATPase subunit HslU, at 438,754 to 440,091
_RS01960
PFLU_RS01965: PFLU_RS01965 - ATP-dependent protease subunit HslV, at 440,129 to 440,659
_RS01965
PFLU_RS01970: PFLU_RS01970 - cell division protein, at 440,917 to 441,618
_RS01970
PFLU_RS01975: PFLU_RS01975 - arginine--tRNA ligase, at 441,620 to 443,356
_RS01975
Position (kb) 440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 439.268 kb on - strand, within PFLU_RS01960 at 439.268 kb on - strand, within PFLU_RS01960 at 439.268 kb on - strand, within PFLU_RS01960 at 439.303 kb on - strand, within PFLU_RS01960 at 439.908 kb on + strand, within PFLU_RS01960 at 439.951 kb on + strand, within PFLU_RS01960 at 440.047 kb on - strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.091 kb on + strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.092 kb on - strand at 440.117 kb on + strand at 440.118 kb on - strand at 440.118 kb on - strand at 440.118 kb on - strand at 440.130 kb on + strand at 440.185 kb on + strand, within PFLU_RS01965 at 440.185 kb on + strand, within PFLU_RS01965 at 440.545 kb on - strand, within PFLU_RS01965 at 440.584 kb on + strand, within PFLU_RS01965 at 440.584 kb on + strand, within PFLU_RS01965 at 440.584 kb on + strand, within PFLU_RS01965 at 440.639 kb on + strand at 440.640 kb on - strand at 440.640 kb on - strand at 440.737 kb on + strand at 440.766 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.865 kb on - strand at 440.939 kb on - strand at 440.939 kb on - strand at 440.939 kb on - strand at 441.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 439,268 - PFLU_RS01960 0.38 -0.2 439,268 - PFLU_RS01960 0.38 +1.1 439,268 - PFLU_RS01960 0.38 +0.1 439,303 - PFLU_RS01960 0.41 +2.7 439,908 + PFLU_RS01960 0.86 +2.7 439,951 + PFLU_RS01960 0.89 +1.1 440,047 - +0.1 440,091 + +0.1 440,091 + -0.2 440,091 + +1.1 440,091 + +1.1 440,091 + +0.1 440,091 + -0.2 440,091 + +0.5 440,091 + +0.5 440,091 + +0.1 440,091 + +2.1 440,092 - +1.1 440,092 - -0.5 440,092 - +0.1 440,092 - -1.1 440,092 - -0.7 440,092 - +0.5 440,092 - +2.1 440,092 - +0.1 440,092 - +0.1 440,092 - +0.1 440,117 + +1.1 440,118 - -0.5 440,118 - -3.0 440,118 - -0.9 440,130 + +1.1 440,185 + PFLU_RS01965 0.11 +0.5 440,185 + PFLU_RS01965 0.11 +0.1 440,545 - PFLU_RS01965 0.78 -0.2 440,584 + PFLU_RS01965 0.86 +1.5 440,584 + PFLU_RS01965 0.86 -1.1 440,584 + PFLU_RS01965 0.86 -1.1 440,639 + -1.1 440,640 - +0.1 440,640 - +4.2 440,737 + +0.3 440,766 - +3.3 440,865 - -2.2 440,865 - -0.5 440,865 - +1.1 440,865 - +1.2 440,865 - +1.5 440,865 - +1.1 440,865 - -0.2 440,865 - +1.5 440,865 - +1.1 440,865 - -2.3 440,865 - +1.1 440,865 - +0.6 440,865 - -1.5 440,865 - +1.3 440,939 - +0.9 440,939 - -2.9 440,939 - +0.5 441,622 - +1.1
Or see this region's nucleotide sequence