Experiment: H2 deepwell acetate FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07855 and MMP_RS07860 overlap by 4 nucleotides MMP_RS07860 and MMP_RS07865 are separated by 9 nucleotides MMP_RS07865 and MMP_RS07870 are separated by 147 nucleotides
MMP_RS07855: MMP_RS07855 - class I SAM-dependent methyltransferase, at 1,488,228 to 1,488,938
_RS07855
MMP_RS07860: MMP_RS07860 - hypothetical protein, at 1,488,935 to 1,489,225
_RS07860
MMP_RS07865: MMP_RS07865 - methanogenesis marker 2 protein, at 1,489,235 to 1,490,206
_RS07865
MMP_RS07870: MMP_RS07870 - phosphoglycerate kinase, at 1,490,354 to 1,491,598
_RS07870
Position (kb)
1489
1490
1491 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1488.315 kb on - strand, within MMP_RS07855 at 1488.381 kb on - strand, within MMP_RS07855 at 1488.382 kb on + strand, within MMP_RS07855 at 1488.383 kb on - strand, within MMP_RS07855 at 1488.383 kb on - strand, within MMP_RS07855 at 1488.386 kb on + strand, within MMP_RS07855 at 1488.703 kb on - strand, within MMP_RS07855 at 1488.703 kb on - strand, within MMP_RS07855 at 1488.703 kb on - strand, within MMP_RS07855 at 1488.704 kb on + strand, within MMP_RS07855 at 1488.704 kb on + strand, within MMP_RS07855 at 1488.704 kb on + strand, within MMP_RS07855 at 1488.705 kb on - strand, within MMP_RS07855 at 1488.705 kb on - strand, within MMP_RS07855 at 1488.706 kb on + strand, within MMP_RS07855 at 1488.706 kb on + strand, within MMP_RS07855 at 1488.733 kb on - strand, within MMP_RS07855 at 1488.734 kb on + strand, within MMP_RS07855 at 1488.913 kb on + strand at 1488.953 kb on + strand at 1488.953 kb on + strand at 1489.071 kb on - strand, within MMP_RS07860 at 1489.198 kb on + strand at 1489.227 kb on - strand at 1489.228 kb on + strand at 1489.228 kb on + strand at 1489.228 kb on + strand at 1489.229 kb on - strand at 1489.299 kb on + strand at 1489.551 kb on + strand at 1489.646 kb on + strand at 1489.779 kb on + strand at 1490.084 kb on - strand at 1490.126 kb on + strand at 1490.277 kb on + strand at 1490.278 kb on - strand at 1490.279 kb on + strand at 1490.281 kb on + strand at 1490.281 kb on + strand at 1490.345 kb on + strand at 1490.356 kb on + strand at 1490.949 kb on + strand at 1491.025 kb on - strand at 1491.026 kb on + strand at 1491.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell acetate FREE remove 1,488,315 - MMP_RS07855 0.12 +1.1 1,488,381 - MMP_RS07855 0.22 +1.0 1,488,382 + MMP_RS07855 0.22 +0.7 1,488,383 - MMP_RS07855 0.22 +1.1 1,488,383 - MMP_RS07855 0.22 +1.2 1,488,386 + MMP_RS07855 0.22 +0.2 1,488,703 - MMP_RS07855 0.67 +1.3 1,488,703 - MMP_RS07855 0.67 +0.8 1,488,703 - MMP_RS07855 0.67 +1.2 1,488,704 + MMP_RS07855 0.67 -0.6 1,488,704 + MMP_RS07855 0.67 +2.0 1,488,704 + MMP_RS07855 0.67 -0.0 1,488,705 - MMP_RS07855 0.67 -0.2 1,488,705 - MMP_RS07855 0.67 -0.4 1,488,706 + MMP_RS07855 0.67 +2.8 1,488,706 + MMP_RS07855 0.67 -0.5 1,488,733 - MMP_RS07855 0.71 +1.0 1,488,734 + MMP_RS07855 0.71 +0.4 1,488,913 + +0.6 1,488,953 + -0.4 1,488,953 + +1.4 1,489,071 - MMP_RS07860 0.47 +1.3 1,489,198 + -0.6 1,489,227 - +1.1 1,489,228 + -0.9 1,489,228 + +0.2 1,489,228 + +1.1 1,489,229 - -1.8 1,489,299 + -3.1 1,489,551 + -2.1 1,489,646 + -0.2 1,489,779 + -4.3 1,490,084 - -4.2 1,490,126 + -2.9 1,490,277 + -4.2 1,490,278 - -2.5 1,490,279 + -2.4 1,490,281 + +0.8 1,490,281 + -0.1 1,490,345 + +0.3 1,490,356 + +2.0 1,490,949 + -2.9 1,491,025 - -4.1 1,491,026 + -2.9 1,491,035 - -2.3
Or see this region's nucleotide sequence