Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16885

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
3,693,570	+		LRK54_RS16875	0.61	-0.9
3,693,570	+		LRK54_RS16875	0.61	-2.7
3,693,577	+		LRK54_RS16875	0.62	+0.6
3,693,577	+		LRK54_RS16875	0.62	-0.4
3,693,577	+		LRK54_RS16875	0.62	+0.6
3,693,577	+		LRK54_RS16875	0.62	+1.6
3,693,578	-		LRK54_RS16875	0.62	-2.1
3,693,578	-		LRK54_RS16875	0.62	-0.4
3,693,578	-		LRK54_RS16875	0.62	-0.9
3,693,578	-		LRK54_RS16875	0.62	-1.7
3,693,578	-		LRK54_RS16875	0.62	-1.5
3,693,578	-		LRK54_RS16875	0.62	-2.9
3,693,578	-		LRK54_RS16875	0.62	-1.8
3,693,578	-		LRK54_RS16875	0.62	-1.4
3,693,578	-		LRK54_RS16875	0.62	-2.2
3,693,578	-		LRK54_RS16875	0.62	-1.4
3,693,591	+		LRK54_RS16875	0.64	-1.7
3,693,591	+		LRK54_RS16875	0.64	-0.9
3,693,591	+		LRK54_RS16875	0.64	-1.7
3,693,591	+		LRK54_RS16875	0.64	-1.2
3,693,591	+		LRK54_RS16875	0.64	-2.6
3,693,663	+		LRK54_RS16875	0.73	-1.8
3,693,663	+		LRK54_RS16875	0.73	-2.8
3,693,663	+		LRK54_RS16875	0.73	-0.2
3,693,663	+		LRK54_RS16875	0.73	-1.4
3,693,663	+		LRK54_RS16875	0.73	-1.4
3,693,663	+		LRK54_RS16875	0.73	-2.9
3,693,663	+		LRK54_RS16875	0.73	+0.8
3,693,663	+		LRK54_RS16875	0.73	-2.5
3,693,663	+		LRK54_RS16875	0.73	+1.6
3,693,663	+		LRK54_RS16875	0.73	+0.3
3,693,663	+		LRK54_RS16875	0.73	-1.2
3,693,663	+		LRK54_RS16875	0.73	+0.1
3,693,663	+		LRK54_RS16875	0.73	-1.7
3,693,663	+		LRK54_RS16875	0.73	-0.4
3,693,663	+		LRK54_RS16875	0.73	-2.9
3,693,663	+		LRK54_RS16875	0.73	-2.7
3,693,663	+		LRK54_RS16875	0.73	-3.1
3,693,663	+		LRK54_RS16875	0.73	-2.2
3,693,664	-		LRK54_RS16875	0.73	-0.4
3,693,664	-		LRK54_RS16875	0.73	-1.4
3,693,664	-		LRK54_RS16875	0.73	-2.7
3,693,664	-		LRK54_RS16875	0.73	-0.9
3,693,664	-		LRK54_RS16875	0.73	-0.4
3,693,664	-		LRK54_RS16875	0.73	+0.6
3,693,664	-		LRK54_RS16875	0.73	-1.4
3,693,664	-		LRK54_RS16875	0.73	-0.9
3,693,664	-		LRK54_RS16875	0.73	-0.4
3,693,664	-		LRK54_RS16875	0.73	-2.3
3,693,664	-		LRK54_RS16875	0.73	-2.5
3,693,729	+		LRK54_RS16875	0.81	-2.8
3,693,729	+		LRK54_RS16875	0.81	-2.6
3,693,729	+		LRK54_RS16875	0.81	-2.1
3,693,730	-		LRK54_RS16875	0.81	-1.8
3,693,730	-		LRK54_RS16875	0.81	-0.9
3,693,730	-		LRK54_RS16875	0.81	-1.5
3,693,913	+				-1.1
3,693,913	+				+0.2
3,693,913	+				-1.7
3,693,913	+				-0.1
3,693,913	+				+0.6
3,693,913	+				+0.9
3,693,913	+				+0.1
3,693,913	+				+1.0
3,693,913	+				+0.0
3,693,913	+				-0.5
3,693,914	-				+0.5
3,693,914	-				+0.6
3,693,914	-				+0.9
3,693,969	+		LRK54_RS16880	0.13	+0.9
3,693,969	+		LRK54_RS16880	0.13	+0.9
3,693,969	+		LRK54_RS16880	0.13	+0.1
3,693,969	+		LRK54_RS16880	0.13	+0.4
3,693,969	+		LRK54_RS16880	0.13	+0.1
3,693,969	+		LRK54_RS16880	0.13	+0.2
3,693,969	+		LRK54_RS16880	0.13	-0.1
3,693,969	+		LRK54_RS16880	0.13	-0.1
3,693,970	-		LRK54_RS16880	0.14	+1.1
3,693,970	-		LRK54_RS16880	0.14	-1.4
3,693,970	-		LRK54_RS16880	0.14	-0.6
3,693,970	-		LRK54_RS16880	0.14	+2.6
3,693,970	-		LRK54_RS16880	0.14	-0.3
3,693,970	-		LRK54_RS16880	0.14	+0.6
3,693,970	-		LRK54_RS16880	0.14	-0.9
3,693,970	-		LRK54_RS16880	0.14	-0.9
3,693,970	-		LRK54_RS16880	0.14	+0.4
3,693,970	-		LRK54_RS16880	0.14	-1.2
3,693,970	-		LRK54_RS16880	0.14	-0.1
3,693,970	-		LRK54_RS16880	0.14	-1.5
3,693,970	-		LRK54_RS16880	0.14	+0.6
3,693,970	-		LRK54_RS16880	0.14	-0.6
3,693,970	-		LRK54_RS16880	0.14	+0.4
3,693,981	+		LRK54_RS16880	0.16	+0.2
3,693,981	+		LRK54_RS16880	0.16	+0.5
3,693,981	+		LRK54_RS16880	0.16	-1.0
3,693,981	+		LRK54_RS16880	0.16	-0.5
3,693,981	+		LRK54_RS16880	0.16	+1.4
3,693,981	+		LRK54_RS16880	0.16	-1.8
3,693,981	+		LRK54_RS16880	0.16	-0.4
3,693,981	+		LRK54_RS16880	0.16	-0.9
3,693,981	+		LRK54_RS16880	0.16	+0.5
3,693,982	-		LRK54_RS16880	0.16	-1.8
3,693,982	-		LRK54_RS16880	0.16	-0.4
3,693,982	-		LRK54_RS16880	0.16	-0.3
3,693,982	-		LRK54_RS16880	0.16	+2.0
3,693,982	-		LRK54_RS16880	0.16	-0.8
3,693,982	-		LRK54_RS16880	0.16	+0.7
3,693,982	-		LRK54_RS16880	0.16	-0.0
3,693,982	-		LRK54_RS16880	0.16	+0.3
3,694,032	+		LRK54_RS16880	0.26	+0.1
3,694,032	+		LRK54_RS16880	0.26	+1.0
3,694,032	+		LRK54_RS16880	0.26	-0.7
3,694,032	+		LRK54_RS16880	0.26	+0.3
3,694,032	+		LRK54_RS16880	0.26	-0.5
3,694,032	+		LRK54_RS16880	0.26	-2.1
3,694,032	+		LRK54_RS16880	0.26	-0.1
3,694,032	+		LRK54_RS16880	0.26	+2.4
3,694,032	+		LRK54_RS16880	0.26	-1.5
3,694,032	+		LRK54_RS16880	0.26	-0.9
3,694,032	+		LRK54_RS16880	0.26	+0.3
3,694,033	-		LRK54_RS16880	0.27	-2.2
3,694,033	-		LRK54_RS16880	0.27	+1.6
3,694,033	-		LRK54_RS16880	0.27	+0.8
3,694,033	-		LRK54_RS16880	0.27	-0.3
3,694,033	-		LRK54_RS16880	0.27	-0.2
3,694,033	-		LRK54_RS16880	0.27	+0.5
3,694,033	-		LRK54_RS16880	0.27	-0.5
3,694,092	+		LRK54_RS16880	0.39	-1.2
3,694,092	+		LRK54_RS16880	0.39	-0.4
3,694,092	+		LRK54_RS16880	0.39	-0.1
3,694,092	+		LRK54_RS16880	0.39	+1.4
3,694,093	-		LRK54_RS16880	0.39	-0.4
3,694,093	-		LRK54_RS16880	0.39	-1.2
3,694,093	-		LRK54_RS16880	0.39	-0.2
3,694,093	-		LRK54_RS16880	0.39	+0.7
3,694,093	-		LRK54_RS16880	0.39	+0.2
3,694,093	-		LRK54_RS16880	0.39	+0.6
3,694,093	-		LRK54_RS16880	0.39	+0.6
3,694,093	-		LRK54_RS16880	0.39	+0.3
3,694,093	-		LRK54_RS16880	0.39	-0.1
3,694,093	-		LRK54_RS16880	0.39	-1.2
3,694,116	+		LRK54_RS16880	0.44	+0.3
3,694,116	+		LRK54_RS16880	0.44	-0.0
3,694,116	+		LRK54_RS16880	0.44	-0.1
3,694,116	+		LRK54_RS16880	0.44	-0.0
3,694,116	+		LRK54_RS16880	0.44	+0.5
3,694,116	+		LRK54_RS16880	0.44	-0.1
3,694,116	+		LRK54_RS16880	0.44	+0.1
3,694,116	+		LRK54_RS16880	0.44	-1.0
3,694,116	+		LRK54_RS16880	0.44	+0.4
3,694,116	+		LRK54_RS16880	0.44	+0.6
3,694,116	+		LRK54_RS16880	0.44	+0.6
3,694,116	+		LRK54_RS16880	0.44	+0.7
3,694,116	+		LRK54_RS16880	0.44	-1.1
3,694,116	+		LRK54_RS16880	0.44	+0.6
3,694,117	-		LRK54_RS16880	0.44	-0.9
3,694,117	-		LRK54_RS16880	0.44	-0.4
3,694,117	-		LRK54_RS16880	0.44	-0.2
3,694,117	-		LRK54_RS16880	0.44	-0.4
3,694,117	-		LRK54_RS16880	0.44	-0.5
3,694,117	-		LRK54_RS16880	0.44	-0.2
3,694,117	-		LRK54_RS16880	0.44	+0.6
3,694,117	-		LRK54_RS16880	0.44	+0.6
3,694,117	-		LRK54_RS16880	0.44	-0.2
3,694,117	-		LRK54_RS16880	0.44	+0.6
3,694,173	+		LRK54_RS16880	0.55	+0.8
3,694,173	+		LRK54_RS16880	0.55	+0.3
3,694,173	+		LRK54_RS16880	0.55	-0.4
3,694,173	+		LRK54_RS16880	0.55	+0.8
3,694,173	+		LRK54_RS16880	0.55	+0.2
3,694,173	+		LRK54_RS16880	0.55	+0.4
3,694,173	+		LRK54_RS16880	0.55	+0.2
3,694,173	+		LRK54_RS16880	0.55	-0.3
3,694,173	+		LRK54_RS16880	0.55	+0.0
3,694,173	+		LRK54_RS16880	0.55	+0.3
3,694,173	+		LRK54_RS16880	0.55	-0.2
3,694,173	+		LRK54_RS16880	0.55	-0.1
3,694,173	+		LRK54_RS16880	0.55	+0.6
3,694,173	+		LRK54_RS16880	0.55	-0.6
3,694,173	+		LRK54_RS16880	0.55	+0.8
3,694,173	+		LRK54_RS16880	0.55	-0.9
3,694,173	+		LRK54_RS16880	0.55	-2.8
3,694,173	+		LRK54_RS16880	0.55	-0.0
3,694,173	+		LRK54_RS16880	0.55	-1.6
3,694,173	+		LRK54_RS16880	0.55	-1.3
3,694,173	+		LRK54_RS16880	0.55	-1.8
3,694,173	+		LRK54_RS16880	0.55	-0.3
3,694,173	+		LRK54_RS16880	0.55	-0.2
3,694,173	+		LRK54_RS16880	0.55	-0.9
3,694,173	+		LRK54_RS16880	0.55	-0.2
3,694,173	+		LRK54_RS16880	0.55	-1.4
3,694,173	+		LRK54_RS16880	0.55	+0.6
3,694,173	+		LRK54_RS16880	0.55	+0.2
3,694,173	+		LRK54_RS16880	0.55	+0.3
3,694,173	+		LRK54_RS16880	0.55	+0.1
3,694,173	+		LRK54_RS16880	0.55	+0.1
3,694,173	+		LRK54_RS16880	0.55	+0.4
3,694,173	+		LRK54_RS16880	0.55	-0.7
3,694,173	+		LRK54_RS16880	0.55	-0.1
3,694,173	+		LRK54_RS16880	0.55	-0.4
3,694,173	+		LRK54_RS16880	0.55	+1.6
3,694,173	+		LRK54_RS16880	0.55	+0.1
3,694,173	+		LRK54_RS16880	0.55	+0.4
3,694,173	+		LRK54_RS16880	0.55	-0.4
3,694,173	+		LRK54_RS16880	0.55	-0.5
3,694,173	+		LRK54_RS16880	0.55	-0.9
3,694,173	+		LRK54_RS16880	0.55	-0.4
3,694,173	+		LRK54_RS16880	0.55	-0.8
3,694,173	+		LRK54_RS16880	0.55	-0.1
3,694,173	+		LRK54_RS16880	0.55	+0.4
3,694,173	+		LRK54_RS16880	0.55	+0.9
3,694,173	+		LRK54_RS16880	0.55	+0.3
3,694,173	+		LRK54_RS16880	0.55	-0.9
3,694,174	-		LRK54_RS16880	0.55	-1.4
3,694,174	-		LRK54_RS16880	0.55	-0.1
3,694,174	-		LRK54_RS16880	0.55	-0.4
3,694,174	-		LRK54_RS16880	0.55	-0.4
3,694,174	-		LRK54_RS16880	0.55	-0.5
3,694,174	-		LRK54_RS16880	0.55	+0.6
3,694,174	-		LRK54_RS16880	0.55	-0.0
3,694,174	-		LRK54_RS16880	0.55	+0.2
3,694,174	-		LRK54_RS16880	0.55	+0.3
3,694,174	-		LRK54_RS16880	0.55	+0.2
3,694,174	-		LRK54_RS16880	0.55	-0.3
3,694,174	-		LRK54_RS16880	0.55	-0.2
3,694,174	-		LRK54_RS16880	0.55	-1.4
3,694,174	-		LRK54_RS16880	0.55	-1.0
3,694,174	-		LRK54_RS16880	0.55	-1.5
3,694,174	-		LRK54_RS16880	0.55	-0.1
3,694,174	-		LRK54_RS16880	0.55	-0.2
3,694,174	-		LRK54_RS16880	0.55	-1.5
3,694,174	-		LRK54_RS16880	0.55	-1.2
3,694,174	-		LRK54_RS16880	0.55	+0.1
3,694,174	-		LRK54_RS16880	0.55	-0.6
3,694,174	-		LRK54_RS16880	0.55	+0.8
3,694,174	-		LRK54_RS16880	0.55	+0.6
3,694,174	-		LRK54_RS16880	0.55	-1.2
3,694,174	-		LRK54_RS16880	0.55	+0.1
3,694,174	-		LRK54_RS16880	0.55	+2.4
3,694,174	-		LRK54_RS16880	0.55	+0.2
3,694,174	-		LRK54_RS16880	0.55	-0.7
3,694,174	-		LRK54_RS16880	0.55	+0.7
3,694,174	-		LRK54_RS16880	0.55	+0.1
3,694,174	-		LRK54_RS16880	0.55	-0.1
3,694,174	-		LRK54_RS16880	0.55	-1.7
3,694,174	-		LRK54_RS16880	0.55	-0.4
3,694,174	-		LRK54_RS16880	0.55	-0.1
3,694,174	-		LRK54_RS16880	0.55	-0.9
3,694,174	-		LRK54_RS16880	0.55	-1.6
3,694,174	-		LRK54_RS16880	0.55	+0.4
3,694,174	-		LRK54_RS16880	0.55	-0.2
3,694,174	-		LRK54_RS16880	0.55	+0.5
3,694,174	-		LRK54_RS16880	0.55	+1.6
3,694,174	-		LRK54_RS16880	0.55	+0.5
3,694,174	-		LRK54_RS16880	0.55	-0.3
3,694,174	-		LRK54_RS16880	0.55	-0.3
3,694,174	-		LRK54_RS16880	0.55	+0.7
3,694,174	-		LRK54_RS16880	0.55	-0.1
3,694,174	-		LRK54_RS16880	0.55	-0.7
3,694,174	-		LRK54_RS16880	0.55	-1.7
3,694,174	-		LRK54_RS16880	0.55	-0.5
3,694,174	-		LRK54_RS16880	0.55	+0.6
3,694,174	-		LRK54_RS16880	0.55	+0.3
3,694,174	-		LRK54_RS16880	0.55	-0.4
3,694,174	-		LRK54_RS16880	0.55	+0.1
3,694,174	-		LRK54_RS16880	0.55	-0.0
3,694,174	-		LRK54_RS16880	0.55	+0.1
3,694,174	-		LRK54_RS16880	0.55	-0.3
3,694,174	-		LRK54_RS16880	0.55	-0.8
3,694,174	-		LRK54_RS16880	0.55	-0.5
3,694,175	+		LRK54_RS16880	0.56	-0.9
3,694,175	+		LRK54_RS16880	0.56	-0.1
3,694,175	+		LRK54_RS16880	0.56	-0.7
3,694,175	+		LRK54_RS16880	0.56	+0.6
3,694,176	-		LRK54_RS16880	0.56	-0.7
3,694,176	-		LRK54_RS16880	0.56	-1.0
3,694,176	-		LRK54_RS16880	0.56	+1.0
3,694,176	-		LRK54_RS16880	0.56	-1.2
3,694,176	-		LRK54_RS16880	0.56	+1.9
3,694,176	-		LRK54_RS16880	0.56	+0.4
3,694,176	-		LRK54_RS16880	0.56	-1.1
3,694,176	-		LRK54_RS16880	0.56	-1.1
3,694,176	-		LRK54_RS16880	0.56	-0.5
3,694,176	-		LRK54_RS16880	0.56	-0.2
3,694,176	-		LRK54_RS16880	0.56	-0.2
3,694,314	+		LRK54_RS16880	0.84	-1.2
3,694,314	+		LRK54_RS16880	0.84	+0.2
3,694,314	+		LRK54_RS16880	0.84	-0.4
3,694,314	+		LRK54_RS16880	0.84	+1.2
3,694,314	+		LRK54_RS16880	0.84	+0.4
3,694,314	+		LRK54_RS16880	0.84	+0.7
3,694,314	+		LRK54_RS16880	0.84	-0.3
3,694,314	+		LRK54_RS16880	0.84	-0.4
3,694,314	+		LRK54_RS16880	0.84	+1.7
3,694,314	+		LRK54_RS16880	0.84	-0.5
3,694,314	+		LRK54_RS16880	0.84	+1.6
3,694,314	+		LRK54_RS16880	0.84	-1.5
3,694,315	-		LRK54_RS16880	0.84	-1.1
3,694,315	-		LRK54_RS16880	0.84	-1.8
3,694,315	-		LRK54_RS16880	0.84	-1.0
3,694,315	-		LRK54_RS16880	0.84	-2.4
3,694,315	-		LRK54_RS16880	0.84	+1.2
3,694,315	-		LRK54_RS16880	0.84	+0.6
3,694,315	-		LRK54_RS16880	0.84	+1.0
3,694,315	-		LRK54_RS16880	0.84	-0.3
3,694,343	+				-0.9
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3,695,413	+		LRK54_RS16900	0.17	+2.6