Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16110

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
3,546,254	-				-0.2
3,546,254	-				-0.7
3,546,254	-				-1.3
3,546,254	-				+0.8
3,546,289	+				-1.0
3,546,289	+				-0.3
3,546,289	+				-1.5
3,546,289	+				+1.0
3,546,289	+				+0.0
3,546,290	-				+0.4
3,546,290	-				+0.6
3,546,290	-				+0.8
3,546,290	-				-0.8
3,546,290	-				-0.1
3,546,290	-				-0.5
3,546,290	-				+0.2
3,546,427	+		LRK54_RS16105	0.25	+0.9
3,546,428	-		LRK54_RS16105	0.25	-0.0
3,546,428	-		LRK54_RS16105	0.25	+0.7
3,546,523	+		LRK54_RS16105	0.38	+1.2
3,546,523	+		LRK54_RS16105	0.38	+1.9
3,546,523	+		LRK54_RS16105	0.38	+0.4
3,546,523	+		LRK54_RS16105	0.38	-0.1
3,546,523	+		LRK54_RS16105	0.38	+0.8
3,546,523	+		LRK54_RS16105	0.38	-1.2
3,546,523	+		LRK54_RS16105	0.38	-0.3
3,546,523	+		LRK54_RS16105	0.38	+0.6
3,546,523	+		LRK54_RS16105	0.38	+0.8
3,546,523	+		LRK54_RS16105	0.38	+0.5
3,546,523	+		LRK54_RS16105	0.38	-1.3
3,546,523	+		LRK54_RS16105	0.38	+0.8
3,546,523	+		LRK54_RS16105	0.38	+0.0
3,546,523	+		LRK54_RS16105	0.38	-1.4
3,546,524	-		LRK54_RS16105	0.38	+0.0
3,546,524	-		LRK54_RS16105	0.38	+1.6
3,546,524	-		LRK54_RS16105	0.38	+1.2
3,546,524	-		LRK54_RS16105	0.38	+1.9
3,546,524	-		LRK54_RS16105	0.38	+2.6
3,546,524	-		LRK54_RS16105	0.38	+0.0
3,546,524	-		LRK54_RS16105	0.38	-0.0
3,546,524	-		LRK54_RS16105	0.38	+1.3
3,546,524	-		LRK54_RS16105	0.38	+1.4
3,546,524	-		LRK54_RS16105	0.38	-1.0
3,546,524	-		LRK54_RS16105	0.38	-0.5
3,546,524	-		LRK54_RS16105	0.38	+3.6
3,546,524	-		LRK54_RS16105	0.38	+0.3
3,547,331	+		LRK54_RS16110	0.44	-1.5
3,547,331	+		LRK54_RS16110	0.44	-0.9
3,547,331	+		LRK54_RS16110	0.44	-2.0
3,547,331	+		LRK54_RS16110	0.44	+0.0
3,547,331	+		LRK54_RS16110	0.44	+0.6
3,547,331	+		LRK54_RS16110	0.44	+0.0
3,547,331	+		LRK54_RS16110	0.44	-2.8
3,547,332	-		LRK54_RS16110	0.44	-2.0
3,547,332	-		LRK54_RS16110	0.44	+0.0
3,547,332	-		LRK54_RS16110	0.44	-0.8
3,547,332	-		LRK54_RS16110	0.44	-1.6
3,547,332	-		LRK54_RS16110	0.44	-1.4
3,547,332	-		LRK54_RS16110	0.44	-0.7
3,547,332	-		LRK54_RS16110	0.44	-1.4
3,547,332	-		LRK54_RS16110	0.44	-1.1
3,547,364	+		LRK54_RS16110	0.50	-2.2
3,547,364	+		LRK54_RS16110	0.50	-4.2
3,547,364	+		LRK54_RS16110	0.50	-2.4
3,547,364	+		LRK54_RS16110	0.50	+0.1
3,547,364	+		LRK54_RS16110	0.50	-0.8
3,547,365	-		LRK54_RS16110	0.50	-0.7
3,547,365	-		LRK54_RS16110	0.50	-1.4
3,547,365	-		LRK54_RS16110	0.50	-0.3
3,547,365	-		LRK54_RS16110	0.50	-2.3
3,547,365	-		LRK54_RS16110	0.50	+0.6
3,547,541	+		LRK54_RS16110	0.86	-0.2
3,547,541	+		LRK54_RS16110	0.86	-0.6
3,547,541	+		LRK54_RS16110	0.86	-0.7
3,547,541	+		LRK54_RS16110	0.86	-3.5
3,547,541	+		LRK54_RS16110	0.86	-2.1
3,547,541	+		LRK54_RS16110	0.86	-3.2
3,547,541	+		LRK54_RS16110	0.86	-4.1
3,547,541	+		LRK54_RS16110	0.86	-2.0
3,547,541	+		LRK54_RS16110	0.86	-3.1
3,547,541	+		LRK54_RS16110	0.86	-1.5
3,547,541	+		LRK54_RS16110	0.86	-1.8
3,547,541	+		LRK54_RS16110	0.86	-1.8
3,547,541	+		LRK54_RS16110	0.86	-3.4
3,547,541	+		LRK54_RS16110	0.86	-2.5
3,547,542	-		LRK54_RS16110	0.86	+0.6
3,547,542	-		LRK54_RS16110	0.86	-1.0
3,547,542	-		LRK54_RS16110	0.86	+0.3
3,547,542	-		LRK54_RS16110	0.86	-1.8
3,547,542	-		LRK54_RS16110	0.86	-1.2
3,547,542	-		LRK54_RS16110	0.86	-1.9
3,547,542	-		LRK54_RS16110	0.86	-0.9
3,547,542	-		LRK54_RS16110	0.86	-2.2
3,547,542	-		LRK54_RS16110	0.86	-1.4
3,547,542	-		LRK54_RS16110	0.86	-0.3
3,547,542	-		LRK54_RS16110	0.86	-0.7
3,547,542	-		LRK54_RS16110	0.86	-3.6
3,547,542	-		LRK54_RS16110	0.86	-1.2
3,547,542	-		LRK54_RS16110	0.86	-1.8
3,547,542	-		LRK54_RS16110	0.86	-1.2
3,547,542	-		LRK54_RS16110	0.86	-1.2
3,547,542	-		LRK54_RS16110	0.86	-2.3
3,547,542	-		LRK54_RS16110	0.86	+0.8
3,547,542	-		LRK54_RS16110	0.86	+1.2
3,547,542	-		LRK54_RS16110	0.86	-1.7
3,547,542	-		LRK54_RS16110	0.86	-0.7
3,547,542	-		LRK54_RS16110	0.86	-1.8
3,547,542	-		LRK54_RS16110	0.86	-3.5
3,547,542	-		LRK54_RS16110	0.86	-0.8
3,547,542	-		LRK54_RS16110	0.86	-3.3
3,547,562	+				+0.2
3,547,562	+				-1.8
3,547,562	+				-0.4
3,547,563	-				-2.4
3,547,563	-				-0.4
3,547,563	-				-2.9
3,547,563	-				-1.3
3,547,580	+				-1.2
3,547,580	+				-3.2
3,547,580	+				-0.4
3,547,580	+				-2.1
3,547,581	-				-0.5
3,547,581	-				-2.5
3,547,581	-				+0.0
3,547,581	-				-2.0
3,547,623	+				-0.5
3,547,624	-				+1.0
3,547,633	+				+0.0
3,547,633	+				-1.1
3,547,633	+				+3.0
3,547,634	-				-1.2
3,547,634	-				-1.7
3,547,634	-				-0.4
3,547,634	-				-0.9
3,547,653	+				+0.0
3,547,653	+				-0.7
3,547,653	+				+0.3
3,547,653	+				+0.0
3,547,653	+				-0.3
3,547,653	+				-1.0
3,547,653	+				-0.0
3,547,654	-				+0.0
3,547,654	-				-1.4
3,547,654	-				+2.2
3,547,654	-				+0.3
3,547,654	-				+2.3
3,547,920	+		LRK54_RS16115	0.15	-0.7
3,547,920	+		LRK54_RS16115	0.15	-0.7
3,547,920	+		LRK54_RS16115	0.15	+1.0
3,547,920	+		LRK54_RS16115	0.15	-1.2
3,547,920	+		LRK54_RS16115	0.15	+1.6
3,547,920	+		LRK54_RS16115	0.15	-0.9
3,547,920	+		LRK54_RS16115	0.15	-0.4
3,547,921	-		LRK54_RS16115	0.15	+0.0
3,547,921	-		LRK54_RS16115	0.15	+0.9
3,547,921	-		LRK54_RS16115	0.15	-0.4
3,547,921	-		LRK54_RS16115	0.15	-1.1
3,547,921	-		LRK54_RS16115	0.15	+0.0
3,547,921	-		LRK54_RS16115	0.15	+1.6
3,547,921	-		LRK54_RS16115	0.15	+1.0
3,547,921	-		LRK54_RS16115	0.15	-1.8
3,547,921	-		LRK54_RS16115	0.15	-0.0
3,547,921	-		LRK54_RS16115	0.15	+0.5
3,547,921	-		LRK54_RS16115	0.15	-1.6
3,547,921	-		LRK54_RS16115	0.15	-0.4
3,547,984	+		LRK54_RS16115	0.19	-0.2
3,547,984	+		LRK54_RS16115	0.19	-0.2
3,547,984	+		LRK54_RS16115	0.19	-1.7
3,547,984	+		LRK54_RS16115	0.19	-0.6
3,547,984	+		LRK54_RS16115	0.19	-1.0
3,547,984	+		LRK54_RS16115	0.19	-0.2
3,547,984	+		LRK54_RS16115	0.19	-0.6
3,547,984	+		LRK54_RS16115	0.19	+1.0
3,547,984	+		LRK54_RS16115	0.19	-1.5
3,547,984	+		LRK54_RS16115	0.19	-0.4
3,547,985	-		LRK54_RS16115	0.19	+0.6
3,547,985	-		LRK54_RS16115	0.19	-1.3
3,547,985	-		LRK54_RS16115	0.19	-1.5
3,547,985	-		LRK54_RS16115	0.19	+0.4
3,547,985	-		LRK54_RS16115	0.19	-1.2
3,547,988	+		LRK54_RS16115	0.19	-0.8
3,547,988	+		LRK54_RS16115	0.19	-1.5
3,547,988	+		LRK54_RS16115	0.19	-0.5
3,547,988	+		LRK54_RS16115	0.19	-0.8
3,547,988	+		LRK54_RS16115	0.19	+1.2
3,547,988	+		LRK54_RS16115	0.19	-0.4
3,547,988	+		LRK54_RS16115	0.19	-1.0
3,547,988	+		LRK54_RS16115	0.19	-2.0
3,547,988	+		LRK54_RS16115	0.19	-0.4
3,547,988	+		LRK54_RS16115	0.19	-1.2
3,547,988	+		LRK54_RS16115	0.19	-0.8
3,547,988	+		LRK54_RS16115	0.19	-0.4
3,547,988	+		LRK54_RS16115	0.19	-0.3
3,547,988	+		LRK54_RS16115	0.19	+0.3
3,547,988	+		LRK54_RS16115	0.19	-1.8
3,547,988	+		LRK54_RS16115	0.19	-1.2
3,547,988	+		LRK54_RS16115	0.19	-2.4
3,547,989	-		LRK54_RS16115	0.19	-1.1
3,547,989	-		LRK54_RS16115	0.19	+0.6
3,547,989	-		LRK54_RS16115	0.19	-0.1
3,547,989	-		LRK54_RS16115	0.19	+1.6
3,547,989	-		LRK54_RS16115	0.19	-1.4
3,547,989	-		LRK54_RS16115	0.19	-0.7
3,547,989	-		LRK54_RS16115	0.19	-0.0
3,547,989	-		LRK54_RS16115	0.19	-0.7
3,547,989	-		LRK54_RS16115	0.19	+1.6
3,547,989	-		LRK54_RS16115	0.19	-1.6
3,547,989	-		LRK54_RS16115	0.19	+0.3
3,548,067	+		LRK54_RS16115	0.24	+0.3
3,548,067	+		LRK54_RS16115	0.24	-1.5
3,548,067	+		LRK54_RS16115	0.24	-0.1
3,548,067	+		LRK54_RS16115	0.24	-0.7
3,548,067	+		LRK54_RS16115	0.24	+1.0
3,548,067	+		LRK54_RS16115	0.24	+1.3
3,548,067	+		LRK54_RS16115	0.24	+1.6
3,548,067	+		LRK54_RS16115	0.24	+0.1
3,548,067	+		LRK54_RS16115	0.24	-0.9
3,548,067	+		LRK54_RS16115	0.24	+0.9
3,548,067	+		LRK54_RS16115	0.24	-0.1
3,548,068	-		LRK54_RS16115	0.24	-0.1
3,548,068	-		LRK54_RS16115	0.24	+0.8
3,548,068	-		LRK54_RS16115	0.24	-2.8
3,548,068	-		LRK54_RS16115	0.24	-0.4
3,548,068	-		LRK54_RS16115	0.24	+1.6
3,548,175	+		LRK54_RS16115	0.31	+0.0
3,548,175	+		LRK54_RS16115	0.31	+0.0
3,548,175	+		LRK54_RS16115	0.31	-0.7
3,548,176	-		LRK54_RS16115	0.31	-0.4
3,548,319	+		LRK54_RS16115	0.40	-1.0
3,548,319	+		LRK54_RS16115	0.40	+0.9
3,548,319	+		LRK54_RS16115	0.40	+0.0
3,548,320	-		LRK54_RS16115	0.40	+2.2
3,548,320	-		LRK54_RS16115	0.40	+0.0
3,548,320	-		LRK54_RS16115	0.40	+2.0
3,548,320	-		LRK54_RS16115	0.40	+0.6
3,548,320	-		LRK54_RS16115	0.40	-0.4
3,548,380	+		LRK54_RS16115	0.44	+1.1
3,548,380	+		LRK54_RS16115	0.44	-2.1
3,548,380	+		LRK54_RS16115	0.44	-2.2
3,548,380	+		LRK54_RS16115	0.44	-0.6
3,548,380	+		LRK54_RS16115	0.44	+0.9
3,548,380	+		LRK54_RS16115	0.44	+0.9
3,548,380	+		LRK54_RS16115	0.44	+0.2
3,548,380	+		LRK54_RS16115	0.44	+0.3
3,548,380	+		LRK54_RS16115	0.44	-1.4
3,548,380	+		LRK54_RS16115	0.44	-0.9
3,548,380	+		LRK54_RS16115	0.44	-0.2
3,548,381	-		LRK54_RS16115	0.44	-0.9
3,548,381	-		LRK54_RS16115	0.44	-0.7
3,548,381	-		LRK54_RS16115	0.44	-0.2
3,548,381	-		LRK54_RS16115	0.44	+1.1
3,548,381	-		LRK54_RS16115	0.44	+0.3
3,548,381	-		LRK54_RS16115	0.44	-0.4
3,548,381	-		LRK54_RS16115	0.44	+0.4
3,548,582	+		LRK54_RS16115	0.57	-1.4
3,548,583	-		LRK54_RS16115	0.57	-1.7