Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15300

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
3,377,605	+				+0.6
3,377,606	-				-3.1
3,377,606	-				+0.1
3,377,606	-				-0.4
3,377,606	-				+1.6
3,377,606	-				+0.8
3,377,650	+				+1.6
3,377,650	+				+0.3
3,377,650	+				+1.6
3,377,650	+				-0.7
3,377,650	+				+0.0
3,377,650	+				+0.6
3,377,650	+				+0.0
3,377,651	-				-0.2
3,377,651	-				+1.0
3,377,651	-				+1.6
3,377,651	-				+0.1
3,377,651	-				-1.0
3,377,651	-				-0.7
3,377,651	-				-0.4
3,377,651	-				+1.0
3,377,651	-				-0.7
3,377,651	-				-0.8
3,377,651	-				+0.4
3,377,651	-				+0.2
3,377,651	-				-0.0
3,377,812	+		LRK54_RS15295	0.26	+1.6
3,377,812	+		LRK54_RS15295	0.26	+0.6
3,377,812	+		LRK54_RS15295	0.26	+2.9
3,377,812	+		LRK54_RS15295	0.26	-0.6
3,377,812	+		LRK54_RS15295	0.26	+0.3
3,377,812	+		LRK54_RS15295	0.26	+0.7
3,377,812	+		LRK54_RS15295	0.26	+0.0
3,377,812	+		LRK54_RS15295	0.26	-0.7
3,377,812	+		LRK54_RS15295	0.26	-1.0
3,377,812	+		LRK54_RS15295	0.26	-1.6
3,377,812	+		LRK54_RS15295	0.26	-0.1
3,377,812	+		LRK54_RS15295	0.26	+0.0
3,377,812	+		LRK54_RS15295	0.26	-1.5
3,377,812	+		LRK54_RS15295	0.26	+1.0
3,377,812	+		LRK54_RS15295	0.26	+0.1
3,377,812	+		LRK54_RS15295	0.26	+0.4
3,377,812	+		LRK54_RS15295	0.26	+1.1
3,377,813	-		LRK54_RS15295	0.26	-0.0
3,377,813	-		LRK54_RS15295	0.26	-0.9
3,377,813	-		LRK54_RS15295	0.26	+1.9
3,377,813	-		LRK54_RS15295	0.26	+0.8
3,377,813	-		LRK54_RS15295	0.26	-1.7
3,377,813	-		LRK54_RS15295	0.26	+0.6
3,377,813	-		LRK54_RS15295	0.26	-0.2
3,377,813	-		LRK54_RS15295	0.26	-1.0
3,377,813	-		LRK54_RS15295	0.26	-0.4
3,377,813	-		LRK54_RS15295	0.26	+0.1
3,377,813	-		LRK54_RS15295	0.26	+1.8
3,377,813	-		LRK54_RS15295	0.26	-1.0
3,377,813	-		LRK54_RS15295	0.26	-0.1
3,377,813	-		LRK54_RS15295	0.26	-0.7
3,377,829	-		LRK54_RS15295	0.28	+0.2
3,377,886	+		LRK54_RS15295	0.35	+1.0
3,377,886	+		LRK54_RS15295	0.35	-0.4
3,377,886	+		LRK54_RS15295	0.35	-0.7
3,377,886	+		LRK54_RS15295	0.35	+0.1
3,377,886	+		LRK54_RS15295	0.35	+0.4
3,377,886	+		LRK54_RS15295	0.35	-2.0
3,377,886	+		LRK54_RS15295	0.35	+0.4
3,377,886	+		LRK54_RS15295	0.35	+0.8
3,377,886	+		LRK54_RS15295	0.35	+0.1
3,377,886	+		LRK54_RS15295	0.35	-0.7
3,377,887	-		LRK54_RS15295	0.35	+0.8
3,377,887	-		LRK54_RS15295	0.35	-0.2
3,377,887	-		LRK54_RS15295	0.35	+0.2
3,377,887	-		LRK54_RS15295	0.35	+0.6
3,377,887	-		LRK54_RS15295	0.35	-1.7
3,377,938	+		LRK54_RS15295	0.42	+0.4
3,377,938	+		LRK54_RS15295	0.42	-0.4
3,377,938	+		LRK54_RS15295	0.42	+0.8
3,377,938	+		LRK54_RS15295	0.42	+1.3
3,377,938	+		LRK54_RS15295	0.42	-0.0
3,377,938	+		LRK54_RS15295	0.42	-0.1
3,377,938	+		LRK54_RS15295	0.42	-0.9
3,377,938	+		LRK54_RS15295	0.42	+0.4
3,377,938	+		LRK54_RS15295	0.42	+2.2
3,377,938	+		LRK54_RS15295	0.42	-0.5
3,377,938	+		LRK54_RS15295	0.42	+0.5
3,377,938	+		LRK54_RS15295	0.42	+0.6
3,377,938	+		LRK54_RS15295	0.42	-0.6
3,377,938	+		LRK54_RS15295	0.42	-0.7
3,377,938	+		LRK54_RS15295	0.42	-2.0
3,377,938	+		LRK54_RS15295	0.42	+1.2
3,377,938	+		LRK54_RS15295	0.42	-1.8
3,377,938	+		LRK54_RS15295	0.42	+0.3
3,377,938	+		LRK54_RS15295	0.42	+0.6
3,377,938	+		LRK54_RS15295	0.42	-0.3
3,377,938	+		LRK54_RS15295	0.42	+0.2
3,377,938	+		LRK54_RS15295	0.42	-0.3
3,377,938	+		LRK54_RS15295	0.42	-1.9
3,377,939	-		LRK54_RS15295	0.42	+0.4
3,377,939	-		LRK54_RS15295	0.42	+0.0
3,377,939	-		LRK54_RS15295	0.42	-2.3
3,377,939	-		LRK54_RS15295	0.42	-0.4
3,377,939	-		LRK54_RS15295	0.42	-0.6
3,377,939	-		LRK54_RS15295	0.42	+0.3
3,377,939	-		LRK54_RS15295	0.42	-0.7
3,377,939	-		LRK54_RS15295	0.42	+0.4
3,377,939	-		LRK54_RS15295	0.42	-0.2
3,377,939	-		LRK54_RS15295	0.42	+0.5
3,377,939	-		LRK54_RS15295	0.42	+0.2
3,377,939	-		LRK54_RS15295	0.42	+0.0
3,377,939	-		LRK54_RS15295	0.42	-0.1
3,378,217	+		LRK54_RS15295	0.77	+0.4
3,378,217	+		LRK54_RS15295	0.77	-0.5
3,378,217	+		LRK54_RS15295	0.77	+0.9
3,378,435	+				-0.4
3,378,435	+				+2.3
3,378,435	+				-0.8
3,378,435	+				-1.7
3,378,435	+				-0.7
3,378,435	+				-2.9
3,378,435	+				-0.1
3,378,435	+				-0.2
3,378,435	+				-0.4
3,378,435	+				+0.8
3,378,435	+				+1.0
3,378,435	+				+0.7
3,378,435	+				-1.6
3,378,435	+				-0.4
3,378,436	-				-1.0
3,378,436	-				-1.6
3,378,436	-				+1.1
3,378,436	-				-0.5
3,378,436	-				+0.4
3,378,436	-				-0.7
3,378,436	-				-0.9
3,378,436	-				-1.1
3,378,436	-				+0.1
3,378,436	-				+0.8
3,378,436	-				+0.1
3,378,436	-				-1.4
3,378,436	-				-0.6
3,378,436	-				-1.2
3,378,436	-				+0.5
3,378,436	-				+1.2
3,378,436	-				+0.1
3,378,436	-				+0.3
3,378,436	-				-1.7
3,378,436	-				+0.0
3,378,436	-				+0.1
3,378,436	-				-1.6
3,378,436	-				+0.0
3,378,436	-				+0.6
3,378,436	-				+0.7
3,378,436	-				+0.7
3,378,439	+				-0.8
3,378,439	+				+0.8
3,378,439	+				+0.6
3,378,439	+				+0.2
3,378,439	+				-0.5
3,378,439	+				+0.6
3,378,439	+				-1.4
3,378,439	+				-1.4
3,378,439	+				-1.2
3,378,439	+				+0.6
3,378,439	+				-0.3
3,378,439	+				+0.6
3,378,439	+				+0.6
3,378,439	+				+0.5
3,378,439	+				-0.9
3,378,439	+				+1.0
3,378,439	+				+0.6
3,378,439	+				-0.7
3,378,439	+				-0.2
3,378,439	+				+0.0
3,378,439	+				-0.4
3,378,439	+				+0.0
3,378,439	+				-1.0
3,378,439	+				-0.7
3,378,439	+				-0.1
3,378,439	+				-0.8
3,378,439	+				+1.1
3,378,439	+				+0.6
3,378,439	+				-1.4
3,378,439	+				-0.4
3,378,439	+				-0.2
3,378,439	+				-0.6
3,378,439	+				+1.6
3,378,439	+				-0.5
3,378,439	+				-1.0
3,378,439	+				-1.0
3,378,439	+				+2.6
3,378,439	+				+0.3
3,378,439	+				-1.3
3,378,439	+				-1.2
3,378,439	+				-0.3
3,378,439	+				-1.8
3,378,439	+				-0.4
3,378,439	+				+0.4
3,378,439	+				-0.7
3,378,439	+				+0.2
3,378,439	+				-0.6
3,378,439	+				-0.4
3,378,439	+				+1.4
3,378,439	+				+1.0
3,378,439	+				+0.0
3,378,439	+				+0.7
3,378,439	+				+0.8
3,378,439	+				-0.1
3,378,439	+				-0.3
3,378,439	+				+0.3
3,378,440	-				+1.0
3,378,440	-				+0.7
3,378,440	-				+1.6
3,378,440	-				-0.1
3,378,440	-				-0.1
3,378,440	-				-1.1
3,378,440	-				-0.6
3,378,440	-				+0.0
3,378,440	-				-0.0
3,378,440	-				+1.1
3,378,440	-				+0.8
3,378,440	-				+0.1
3,378,440	-				-0.3
3,378,440	-				-1.7
3,378,440	-				+0.5
3,378,440	-				+1.3
3,378,440	-				+0.7
3,378,440	-				-1.0
3,378,440	-				-0.3
3,378,440	-				-0.3
3,378,440	-				+1.6
3,378,440	-				+0.7
3,378,440	-				-1.9
3,378,440	-				+0.5
3,378,440	-				-0.4
3,378,440	-				+0.2
3,378,440	-				-0.0
3,378,440	-				+0.6
3,378,440	-				+0.0
3,378,440	-				-1.2
3,378,440	-				-2.2
3,378,440	-				+0.6
3,378,440	-				-0.7
3,378,440	-				-1.4
3,378,440	-				+0.0
3,378,440	-				-1.2
3,378,440	-				-0.1
3,378,440	-				+1.2
3,378,440	-				+1.4
3,378,440	-				+0.1
3,378,440	-				-0.2
3,378,440	-				-0.8
3,378,440	-				-0.9
3,378,440	-				-2.1
3,378,440	-				+0.1
3,378,440	-				-1.0
3,378,440	-				+0.6
3,378,440	-				+1.6
3,378,440	-				-0.7
3,378,440	-				+0.1
3,378,440	-				+0.4
3,378,440	-				+0.0
3,378,440	-				-0.5
3,378,440	-				-0.2
3,378,440	-				+1.0
3,378,440	-				-0.9
3,378,440	-				-0.9
3,378,440	-				-2.2
3,378,440	-				+0.8
3,378,477	+				-0.6
3,378,477	+				-1.0
3,378,495	+				+0.2
3,378,500	-				+1.1
3,378,500	-				-0.7
3,378,572	-		LRK54_RS15300	0.11	-0.1
3,378,572	-		LRK54_RS15300	0.11	-1.0
3,378,572	-		LRK54_RS15300	0.11	-0.2
3,378,853	+		LRK54_RS15300	0.57	+0.3
3,378,853	+		LRK54_RS15300	0.57	+2.1
3,378,854	-		LRK54_RS15300	0.57	-1.4
3,378,854	-		LRK54_RS15300	0.57	-0.3
3,378,854	-		LRK54_RS15300	0.57	-0.6
3,379,000	+		LRK54_RS15300	0.82	+0.4
3,379,000	+		LRK54_RS15300	0.82	-1.4
3,379,000	+		LRK54_RS15300	0.82	+2.0
3,379,000	+		LRK54_RS15300	0.82	-1.6
3,379,000	+		LRK54_RS15300	0.82	+0.5
3,379,000	+		LRK54_RS15300	0.82	+2.6
3,379,000	+		LRK54_RS15300	0.82	-0.7
3,379,000	+		LRK54_RS15300	0.82	+0.3
3,379,000	+		LRK54_RS15300	0.82	+0.0
3,379,000	+		LRK54_RS15300	0.82	+0.5
3,379,000	+		LRK54_RS15300	0.82	+1.2
3,379,000	+		LRK54_RS15300	0.82	+0.1
3,379,000	+		LRK54_RS15300	0.82	+0.4
3,379,000	+		LRK54_RS15300	0.82	-0.6
3,379,000	+		LRK54_RS15300	0.82	+0.5
3,379,000	+		LRK54_RS15300	0.82	-1.6
3,379,000	+		LRK54_RS15300	0.82	+1.1
3,379,000	+		LRK54_RS15300	0.82	+0.3
3,379,001	-		LRK54_RS15300	0.82	-0.8
3,379,001	-		LRK54_RS15300	0.82	-1.0
3,379,001	-		LRK54_RS15300	0.82	+1.0
3,379,001	-		LRK54_RS15300	0.82	-0.4
3,379,001	-		LRK54_RS15300	0.82	-0.3
3,379,001	-		LRK54_RS15300	0.82	-0.6
3,379,001	-		LRK54_RS15300	0.82	-0.0
3,379,001	-		LRK54_RS15300	0.82	-0.3
3,379,001	-		LRK54_RS15300	0.82	-0.7
3,379,001	-		LRK54_RS15300	0.82	-0.6
3,379,001	-		LRK54_RS15300	0.82	+0.2
3,379,001	-		LRK54_RS15300	0.82	-0.4
3,379,001	-		LRK54_RS15300	0.82	-0.3
3,379,001	-		LRK54_RS15300	0.82	-1.1
3,379,066	-				-2.5
3,379,066	-				-1.7
3,379,066	-				+0.5
3,379,331	+		LRK54_RS15305	0.23	-0.1
3,379,331	+		LRK54_RS15305	0.23	-0.5
3,379,331	+		LRK54_RS15305	0.23	-0.4
3,379,331	+		LRK54_RS15305	0.23	+0.6
3,379,331	+		LRK54_RS15305	0.23	-0.4
3,379,331	+		LRK54_RS15305	0.23	-0.2
3,379,331	+		LRK54_RS15305	0.23	+0.5
3,379,331	+		LRK54_RS15305	0.23	-0.6
3,379,331	+		LRK54_RS15305	0.23	+0.6
3,379,331	+		LRK54_RS15305	0.23	-1.0
3,379,331	+		LRK54_RS15305	0.23	-0.1
3,379,331	+		LRK54_RS15305	0.23	-1.2
3,379,331	+		LRK54_RS15305	0.23	-0.5
3,379,331	+		LRK54_RS15305	0.23	+0.0
3,379,331	+		LRK54_RS15305	0.23	+0.6
3,379,331	+		LRK54_RS15305	0.23	-1.1
3,379,331	+		LRK54_RS15305	0.23	-0.3
3,379,331	+		LRK54_RS15305	0.23	-0.5
3,379,331	+		LRK54_RS15305	0.23	+1.6
3,379,331	+		LRK54_RS15305	0.23	+0.0
3,379,332	-		LRK54_RS15305	0.23	-0.1
3,379,332	-		LRK54_RS15305	0.23	+0.2
3,379,332	-		LRK54_RS15305	0.23	+0.8
3,379,332	-		LRK54_RS15305	0.23	-0.8
3,379,332	-		LRK54_RS15305	0.23	-0.3
3,379,332	-		LRK54_RS15305	0.23	+0.2
3,379,332	-		LRK54_RS15305	0.23	+0.4
3,379,332	-		LRK54_RS15305	0.23	+1.0
3,379,332	-		LRK54_RS15305	0.23	-0.4
3,379,332	-		LRK54_RS15305	0.23	+0.5
3,379,332	-		LRK54_RS15305	0.23	-0.8
3,379,332	-		LRK54_RS15305	0.23	-1.0
3,379,361	+		LRK54_RS15305	0.27	+1.0
3,379,541	+		LRK54_RS15305	0.47	-0.4
3,379,542	-		LRK54_RS15305	0.47	-1.2
3,379,721	+		LRK54_RS15305	0.66	+0.6
3,379,721	+		LRK54_RS15305	0.66	-0.3
3,379,721	+		LRK54_RS15305	0.66	+0.0
3,379,721	+		LRK54_RS15305	0.66	-0.3
3,379,721	+		LRK54_RS15305	0.66	+0.5
3,379,721	+		LRK54_RS15305	0.66	-2.5
3,379,721	+		LRK54_RS15305	0.66	-1.1
3,379,721	+		LRK54_RS15305	0.66	+1.0
3,379,721	+		LRK54_RS15305	0.66	-0.9
3,379,721	+		LRK54_RS15305	0.66	+0.5
3,379,721	+		LRK54_RS15305	0.66	+1.3
3,379,721	+		LRK54_RS15305	0.66	+1.0
3,379,721	+		LRK54_RS15305	0.66	-0.4
3,379,721	+		LRK54_RS15305	0.66	-0.3
3,379,721	+		LRK54_RS15305	0.66	-0.0
3,379,721	+		LRK54_RS15305	0.66	-0.5
3,379,721	+		LRK54_RS15305	0.66	+0.1
3,379,721	+		LRK54_RS15305	0.66	+0.4
3,379,721	+		LRK54_RS15305	0.66	-1.0
3,379,722	-		LRK54_RS15305	0.67	-0.2
3,379,722	-		LRK54_RS15305	0.67	+2.0
3,379,722	-		LRK54_RS15305	0.67	+0.1
3,379,722	-		LRK54_RS15305	0.67	+1.1
3,379,722	-		LRK54_RS15305	0.67	+0.2
3,379,722	-		LRK54_RS15305	0.67	+1.3
3,379,722	-		LRK54_RS15305	0.67	+0.6
3,379,722	-		LRK54_RS15305	0.67	-1.9
3,379,722	-		LRK54_RS15305	0.67	+1.5
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3,379,860	-		LRK54_RS15305	0.82	-0.6
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