Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12785

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
2,863,301	-		LRK54_RS12775	0.69	+0.1
2,863,301	-		LRK54_RS12775	0.69	-1.3
2,863,375	+		LRK54_RS12775	0.77	-1.9
2,863,375	+		LRK54_RS12775	0.77	+0.6
2,863,375	+		LRK54_RS12775	0.77	-0.3
2,863,375	+		LRK54_RS12775	0.77	+0.2
2,863,375	+		LRK54_RS12775	0.77	-0.0
2,863,375	+		LRK54_RS12775	0.77	-0.1
2,863,375	+		LRK54_RS12775	0.77	+0.4
2,863,375	+		LRK54_RS12775	0.77	-0.7
2,863,375	+		LRK54_RS12775	0.77	-0.8
2,863,375	+		LRK54_RS12775	0.77	+0.8
2,863,375	+		LRK54_RS12775	0.77	-0.1
2,863,376	-		LRK54_RS12775	0.77	-0.7
2,863,376	-		LRK54_RS12775	0.77	-0.4
2,863,376	-		LRK54_RS12775	0.77	-0.6
2,863,376	-		LRK54_RS12775	0.77	+0.6
2,863,376	-		LRK54_RS12775	0.77	+0.3
2,863,376	-		LRK54_RS12775	0.77	-0.4
2,863,376	-		LRK54_RS12775	0.77	-0.2
2,863,376	-		LRK54_RS12775	0.77	+0.1
2,863,376	-		LRK54_RS12775	0.77	-0.1
2,863,376	-		LRK54_RS12775	0.77	-0.7
2,863,609	+				-0.3
2,863,611	-				+0.6
2,863,611	-				-0.1
2,863,612	+				+1.6
2,863,612	+				-0.7
2,863,612	+				-1.0
2,863,612	+				+0.6
2,863,612	+				-2.1
2,863,613	-				-1.4
2,863,613	-				+0.2
2,863,613	-				-0.2
2,863,613	-				-1.4
2,863,615	+				-1.7
2,863,616	-				-0.7
2,863,626	-				-0.5
2,863,628	-				+1.2
2,863,906	+				-0.2
2,863,906	+				+0.4
2,863,906	+				-1.1
2,863,906	+				-0.9
2,863,906	+				+0.3
2,863,906	+				-1.1
2,863,906	+				+0.5
2,863,906	+				+0.2
2,863,906	+				-1.4
2,863,906	+				+1.0
2,863,907	-				-0.9
2,863,907	-				+0.3
2,863,907	-				+0.5
2,863,907	-				+0.4
2,863,907	-				+0.1
2,863,907	-				+0.8
2,863,907	-				+0.6
2,863,907	-				-0.1
2,863,907	-				-0.0
2,863,907	-				-2.1
2,863,907	-				-0.7
2,863,907	-				+0.1
2,863,907	-				-0.4
2,863,916	-				-2.1
2,863,916	-				+0.2
2,863,916	-				-1.0
2,863,927	+				+0.6
2,863,927	+				+1.6
2,863,927	+				+0.0
2,863,927	+				+0.6
2,863,927	+				-0.2
2,863,927	+				-1.1
2,863,927	+				+0.9
2,863,927	+				-0.7
2,863,928	-				+0.9
2,863,928	-				+0.1
2,863,928	-				-0.4
2,863,928	-				-1.1
2,863,928	-				-0.4
2,863,928	-				-1.1
2,863,928	-				+0.4
2,863,928	-				+0.5
2,863,928	-				+0.8
2,863,941	+				-0.9
2,864,004	+				-0.9
2,864,004	+				+2.6
2,864,004	+				-0.5
2,864,004	+				+0.6
2,864,005	-				-1.1
2,864,005	-				-0.4
2,864,005	-				-0.2
2,864,005	-				-0.6
2,864,005	-				+0.6
2,864,005	-				-0.4
2,864,026	+				+0.6
2,864,026	+				-0.2
2,864,026	+				-1.4
2,864,026	+				-1.4
2,864,026	+				+0.1
2,864,027	-				-0.9
2,864,027	-				-0.7
2,864,027	-				-0.0
2,864,027	-				+0.6
2,864,027	-				+0.2
2,864,133	-				-0.3
2,864,210	+				+0.5
2,864,210	+				+0.5
2,864,210	+				+0.6
2,864,210	+				+0.3
2,864,211	-				-1.0
2,864,211	-				+2.6
2,864,211	-				-2.7
2,864,358	+				+0.4
2,864,358	+				+0.7
2,864,358	+				-1.0
2,864,358	+				+0.6
2,864,358	+				-1.2
2,864,359	-				-0.7
2,864,359	-				+0.2
2,864,359	-				-0.6
2,864,359	-				+0.5
2,864,522	+		LRK54_RS12785	0.29	-0.2
2,864,522	+		LRK54_RS12785	0.29	+0.2
2,864,522	+		LRK54_RS12785	0.29	+0.6
2,864,522	+		LRK54_RS12785	0.29	-0.2
2,864,522	+		LRK54_RS12785	0.29	+1.0
2,864,522	+		LRK54_RS12785	0.29	+0.1
2,864,522	+		LRK54_RS12785	0.29	-0.3
2,864,522	+		LRK54_RS12785	0.29	-0.0
2,864,522	+		LRK54_RS12785	0.29	-1.9
2,864,522	+		LRK54_RS12785	0.29	-1.2
2,864,522	+		LRK54_RS12785	0.29	+0.2
2,864,523	-		LRK54_RS12785	0.30	-0.3
2,864,523	-		LRK54_RS12785	0.30	+1.6
2,864,523	-		LRK54_RS12785	0.30	-0.2
2,864,523	-		LRK54_RS12785	0.30	-1.2
2,864,523	-		LRK54_RS12785	0.30	+0.8
2,864,523	-		LRK54_RS12785	0.30	+1.6
2,864,523	-		LRK54_RS12785	0.30	+1.1
2,864,523	-		LRK54_RS12785	0.30	-0.4
2,864,523	-		LRK54_RS12785	0.30	-0.7
2,864,523	-		LRK54_RS12785	0.30	+0.9
2,864,523	-		LRK54_RS12785	0.30	+2.6
2,864,523	-		LRK54_RS12785	0.30	-0.0
2,864,523	-		LRK54_RS12785	0.30	-0.2
2,864,523	-		LRK54_RS12785	0.30	+0.1
2,864,547	+		LRK54_RS12785	0.33	+0.9
2,864,548	-		LRK54_RS12785	0.33	-0.1
2,864,548	-		LRK54_RS12785	0.33	-0.4
2,864,548	-		LRK54_RS12785	0.33	-0.1
2,864,646	+		LRK54_RS12785	0.46	+1.2
2,864,647	-		LRK54_RS12785	0.46	-0.2
2,864,700	+		LRK54_RS12785	0.53	-0.2
2,864,751	+		LRK54_RS12785	0.60	-0.5
2,864,809	-		LRK54_RS12785	0.68	+0.6
2,864,895	+		LRK54_RS12785	0.79	+2.7
2,864,895	+		LRK54_RS12785	0.79	-0.1
2,864,896	-		LRK54_RS12785	0.79	+0.1
2,865,180	+		LRK54_RS12790	0.11	+0.6
2,865,180	+		LRK54_RS12790	0.11	+0.5
2,865,180	+		LRK54_RS12790	0.11	-0.2
2,865,180	+		LRK54_RS12790	0.11	+1.1
2,865,180	+		LRK54_RS12790	0.11	-0.1
2,865,180	+		LRK54_RS12790	0.11	+0.3
2,865,180	+		LRK54_RS12790	0.11	-2.3
2,865,180	+		LRK54_RS12790	0.11	+0.4
2,865,180	+		LRK54_RS12790	0.11	-1.4
2,865,181	-		LRK54_RS12790	0.11	+0.9
2,865,181	-		LRK54_RS12790	0.11	+1.6
2,865,181	-		LRK54_RS12790	0.11	-0.3
2,865,414	+		LRK54_RS12790	0.37	+1.6
2,865,414	+		LRK54_RS12790	0.37	+0.6
2,865,414	+		LRK54_RS12790	0.37	-0.6
2,865,414	+		LRK54_RS12790	0.37	-0.3
2,865,414	+		LRK54_RS12790	0.37	+0.6
2,865,414	+		LRK54_RS12790	0.37	-1.1
2,865,414	+		LRK54_RS12790	0.37	-0.1
2,865,414	+		LRK54_RS12790	0.37	-0.9
2,865,414	+		LRK54_RS12790	0.37	-0.8
2,865,414	+		LRK54_RS12790	0.37	-0.7
2,865,414	+		LRK54_RS12790	0.37	+0.3
2,865,414	+		LRK54_RS12790	0.37	-0.4
2,865,414	+		LRK54_RS12790	0.37	-1.4
2,865,414	+		LRK54_RS12790	0.37	+0.9
2,865,414	+		LRK54_RS12790	0.37	+0.5
2,865,414	+		LRK54_RS12790	0.37	-0.6
2,865,414	+		LRK54_RS12790	0.37	-0.1
2,865,414	+		LRK54_RS12790	0.37	-0.7
2,865,414	+		LRK54_RS12790	0.37	+0.6
2,865,414	+		LRK54_RS12790	0.37	+0.2
2,865,414	+		LRK54_RS12790	0.37	+0.4
2,865,415	-		LRK54_RS12790	0.37	-1.4
2,865,415	-		LRK54_RS12790	0.37	-0.7
2,865,415	-		LRK54_RS12790	0.37	+0.5
2,865,415	-		LRK54_RS12790	0.37	-0.5
2,865,415	-		LRK54_RS12790	0.37	+0.1
2,865,415	-		LRK54_RS12790	0.37	-0.2
2,865,415	-		LRK54_RS12790	0.37	+0.8
2,865,415	-		LRK54_RS12790	0.37	+0.7
2,865,415	-		LRK54_RS12790	0.37	+0.6
2,865,415	-		LRK54_RS12790	0.37	+0.5
2,865,415	-		LRK54_RS12790	0.37	-0.5
2,865,415	-		LRK54_RS12790	0.37	+1.6
2,865,415	-		LRK54_RS12790	0.37	+0.0
2,865,415	-		LRK54_RS12790	0.37	+0.9
2,865,415	-		LRK54_RS12790	0.37	-0.4
2,865,415	-		LRK54_RS12790	0.37	-0.6
2,865,420	+		LRK54_RS12790	0.37	+0.5
2,865,420	+		LRK54_RS12790	0.37	+0.6
2,865,420	+		LRK54_RS12790	0.37	-1.2
2,865,420	+		LRK54_RS12790	0.37	+0.6
2,865,420	+		LRK54_RS12790	0.37	+0.1
2,865,420	+		LRK54_RS12790	0.37	-1.5
2,865,420	+		LRK54_RS12790	0.37	-1.5
2,865,420	+		LRK54_RS12790	0.37	+0.1
2,865,420	+		LRK54_RS12790	0.37	+0.2
2,865,420	+		LRK54_RS12790	0.37	+0.3
2,865,420	+		LRK54_RS12790	0.37	+0.6
2,865,421	-		LRK54_RS12790	0.37	+0.9
2,865,421	-		LRK54_RS12790	0.37	-0.9
2,865,421	-		LRK54_RS12790	0.37	+0.1
2,865,421	-		LRK54_RS12790	0.37	+0.3
2,865,421	-		LRK54_RS12790	0.37	-0.0
2,865,421	-		LRK54_RS12790	0.37	-1.4
2,865,421	-		LRK54_RS12790	0.37	-0.9
2,865,421	-		LRK54_RS12790	0.37	-0.9
2,865,421	-		LRK54_RS12790	0.37	+0.2
2,865,483	+		LRK54_RS12790	0.44	+0.7
2,865,483	+		LRK54_RS12790	0.44	-0.8
2,865,483	+		LRK54_RS12790	0.44	+2.2
2,865,483	+		LRK54_RS12790	0.44	+0.1
2,865,484	-		LRK54_RS12790	0.44	+0.4
2,865,484	-		LRK54_RS12790	0.44	-2.1
2,865,484	-		LRK54_RS12790	0.44	-0.0
2,865,484	-		LRK54_RS12790	0.44	+3.2
2,865,484	-		LRK54_RS12790	0.44	+0.5
2,865,484	-		LRK54_RS12790	0.44	+1.0
2,865,579	+		LRK54_RS12790	0.55	-1.7
2,865,579	+		LRK54_RS12790	0.55	+0.2
2,865,579	+		LRK54_RS12790	0.55	+0.2
2,865,579	+		LRK54_RS12790	0.55	-1.2
2,865,580	-		LRK54_RS12790	0.55	-1.2
2,865,642	+		LRK54_RS12790	0.62	-0.8
2,865,643	-		LRK54_RS12790	0.62	+0.3
2,865,643	-		LRK54_RS12790	0.62	-0.2
2,865,838	+		LRK54_RS12790	0.83	-1.3
2,865,839	-		LRK54_RS12790	0.83	-0.4
2,866,011	-				+0.4
2,866,018	+				-1.2
2,866,037	+				-1.9
2,866,037	+				-0.6
2,866,037	+				-1.4
2,866,038	-				-3.1