Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12560

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
2,802,123	+				-0.3
2,802,124	-				-1.1
2,802,414	+				-0.6
2,802,414	+				+0.4
2,802,415	-				+0.2
2,802,415	-				+0.2
2,802,416	+				-0.6
2,802,416	+				-0.8
2,802,416	+				-0.4
2,802,416	+				-0.8
2,802,416	+				+0.1
2,802,416	+				-2.3
2,802,416	+				-1.2
2,802,417	-				+0.3
2,802,417	-				-0.7
2,802,417	-				+1.2
2,802,417	-				+0.3
2,802,417	-				+1.2
2,802,417	-				-0.5
2,802,417	-				-1.4
2,802,417	-				-0.4
2,802,417	-				-1.5
2,802,417	-				+0.1
2,802,417	-				-0.9
2,802,455	-		LRK54_RS12550	0.11	-0.2
2,802,518	+		LRK54_RS12550	0.32	-0.3
2,802,518	+		LRK54_RS12550	0.32	-0.6
2,802,518	+		LRK54_RS12550	0.32	-0.3
2,802,518	+		LRK54_RS12550	0.32	-0.7
2,802,518	+		LRK54_RS12550	0.32	-1.2
2,802,519	-		LRK54_RS12550	0.33	+0.0
2,802,519	-		LRK54_RS12550	0.33	-1.7
2,802,519	-		LRK54_RS12550	0.33	+2.6
2,802,519	-		LRK54_RS12550	0.33	-0.7
2,802,519	-		LRK54_RS12550	0.33	-1.4
2,802,519	-		LRK54_RS12550	0.33	-0.5
2,802,519	-		LRK54_RS12550	0.33	-0.2
2,802,519	-		LRK54_RS12550	0.33	+0.5
2,802,567	-		LRK54_RS12550	0.49	+0.9
2,802,573	+		LRK54_RS12550	0.51	-0.8
2,802,573	+		LRK54_RS12550	0.51	+0.4
2,802,578	+		LRK54_RS12550	0.53	-2.0
2,802,578	+		LRK54_RS12550	0.53	+0.2
2,802,579	-		LRK54_RS12550	0.53	-0.9
2,802,579	-		LRK54_RS12550	0.53	+0.1
2,802,590	+		LRK54_RS12550	0.57	-0.6
2,802,590	+		LRK54_RS12550	0.57	-0.5
2,802,590	+		LRK54_RS12550	0.57	-1.3
2,802,590	+		LRK54_RS12550	0.57	-0.8
2,802,590	+		LRK54_RS12550	0.57	+1.1
2,802,591	-		LRK54_RS12550	0.57	+1.0
2,802,591	-		LRK54_RS12550	0.57	-0.3
2,802,591	-		LRK54_RS12550	0.57	-0.6
2,802,591	-		LRK54_RS12550	0.57	+0.1
2,802,591	-		LRK54_RS12550	0.57	+0.8
2,802,591	-		LRK54_RS12550	0.57	-1.4
2,802,620	+		LRK54_RS12550	0.67	-0.5
2,802,645	+		LRK54_RS12550	0.75	+0.1
2,802,646	-		LRK54_RS12550	0.75	-2.5
2,802,649	+		LRK54_RS12550	0.76	-1.7
2,802,649	+		LRK54_RS12550	0.76	-1.0
2,802,649	+		LRK54_RS12550	0.76	+0.0
2,802,649	+		LRK54_RS12550	0.76	-0.4
2,802,649	+		LRK54_RS12550	0.76	-0.4
2,802,649	+		LRK54_RS12550	0.76	+2.1
2,802,649	+		LRK54_RS12550	0.76	-0.8
2,802,649	+		LRK54_RS12550	0.76	+1.6
2,802,650	-		LRK54_RS12550	0.77	+0.2
2,802,650	-		LRK54_RS12550	0.77	-0.4
2,802,650	-		LRK54_RS12550	0.77	-0.4
2,802,650	-		LRK54_RS12550	0.77	-1.0
2,802,652	+		LRK54_RS12550	0.77	-1.3
2,802,653	-		LRK54_RS12550	0.78	+0.4
2,802,653	-		LRK54_RS12550	0.78	-0.3
2,802,653	-		LRK54_RS12550	0.78	-1.9
2,802,684	+		LRK54_RS12550	0.88	+0.9
2,802,684	+		LRK54_RS12550	0.88	-1.2
2,802,684	+		LRK54_RS12550	0.88	-0.3
2,802,716	+				-1.8
2,802,716	+				-0.7
2,802,716	+				+2.8
2,802,749	-				-2.1
2,802,749	-				+2.6
2,802,749	-				-1.9
2,802,749	-				-0.9
2,802,756	-				-0.7
2,802,756	-				+0.4
2,803,979	+				+0.5
2,804,083	+				+0.1
2,804,083	+				-0.8
2,804,083	+				-0.3
2,804,089	+				-2.3
2,804,089	+				+1.4
2,804,134	-				-1.2
2,804,162	+				-0.0
2,804,208	+				-0.7
2,804,208	+				+0.6
2,804,209	-				-0.7
2,804,274	+				-1.8
2,804,312	+				+1.1
2,804,312	+				+0.6
2,804,312	+				-0.4
2,804,312	+				-0.1
2,804,312	+				-0.1
2,804,312	+				-0.2
2,804,312	+				-0.4
2,804,313	-				+1.6
2,804,313	-				-0.8
2,804,313	-				-1.1
2,804,313	-				+0.2
2,804,313	-				-1.3
2,804,313	-				-2.5
2,804,313	-				-1.4
2,804,313	-				+0.7
2,804,313	-				-1.1
2,804,313	-				+0.3
2,804,313	-				-0.2
2,804,338	+				-1.9
2,804,338	+				+0.6
2,804,339	-				-0.2
2,804,339	-				+0.6
2,804,390	+				-0.8
2,804,391	+				-0.8
2,804,391	+				-1.0
2,804,391	+				-0.7
2,804,391	+				-0.0
2,804,391	+				+0.0
2,804,391	+				+0.3
2,804,391	+				+0.5
2,804,391	+				-0.9
2,804,391	+				-0.7
2,804,391	+				-1.2
2,804,391	+				-0.9
2,804,392	-				-0.6
2,804,392	-				+0.3
2,804,392	-				-0.4
2,804,392	-				+1.4
2,804,392	-				+0.6
2,804,392	-				+0.6
2,804,392	-				+0.3
2,804,392	-				-3.0
2,804,392	-				-0.9
2,804,392	-				-0.2
2,804,392	-				-0.8
2,804,392	-				+0.8
2,804,392	-				+0.1
2,804,392	-				+0.1
2,804,392	-				+0.4
2,804,392	-				-0.7
2,804,392	-				-0.7
2,804,462	+		LRK54_RS12565	0.18	+2.1
2,804,462	+		LRK54_RS12565	0.18	-0.4
2,804,462	+		LRK54_RS12565	0.18	-0.5
2,804,463	-		LRK54_RS12565	0.18	+0.4
2,804,463	-		LRK54_RS12565	0.18	-0.5
2,804,463	-		LRK54_RS12565	0.18	-1.0
2,804,463	-		LRK54_RS12565	0.18	-0.8
2,804,547	-		LRK54_RS12565	0.30	-0.7
2,804,547	-		LRK54_RS12565	0.30	+0.1
2,804,547	-		LRK54_RS12565	0.30	-0.5
2,804,553	+		LRK54_RS12565	0.30	-2.4
2,804,553	+		LRK54_RS12565	0.30	-2.7
2,804,553	+		LRK54_RS12565	0.30	-1.2
2,804,553	+		LRK54_RS12565	0.30	+0.2
2,804,553	+		LRK54_RS12565	0.30	-0.9
2,804,553	+		LRK54_RS12565	0.30	-1.6
2,804,553	+		LRK54_RS12565	0.30	+0.4
2,804,553	+		LRK54_RS12565	0.30	+0.5
2,804,554	-		LRK54_RS12565	0.31	+0.6
2,804,554	-		LRK54_RS12565	0.31	-0.4
2,804,554	-		LRK54_RS12565	0.31	-0.2
2,804,571	+		LRK54_RS12565	0.33	-0.9
2,804,583	+		LRK54_RS12565	0.35	-0.9
2,804,583	+		LRK54_RS12565	0.35	-0.6
2,804,583	+		LRK54_RS12565	0.35	+0.6
2,804,584	-		LRK54_RS12565	0.35	-1.5
2,804,584	-		LRK54_RS12565	0.35	-0.7
2,804,584	-		LRK54_RS12565	0.35	+1.6
2,804,584	-		LRK54_RS12565	0.35	+0.2
2,804,610	+		LRK54_RS12565	0.38	-0.0
2,804,610	+		LRK54_RS12565	0.38	+2.6
2,804,610	+		LRK54_RS12565	0.38	-0.9
2,804,610	+		LRK54_RS12565	0.38	-2.4
2,804,611	-		LRK54_RS12565	0.39	+1.0
2,804,611	-		LRK54_RS12565	0.39	+0.1
2,804,611	-		LRK54_RS12565	0.39	-1.8
2,804,611	-		LRK54_RS12565	0.39	+0.6
2,804,611	-		LRK54_RS12565	0.39	-0.4
2,804,611	-		LRK54_RS12565	0.39	-0.9
2,804,628	-		LRK54_RS12565	0.41	+0.8
2,804,628	-		LRK54_RS12565	0.41	-1.1
2,804,634	+		LRK54_RS12565	0.42	-0.5
2,804,634	+		LRK54_RS12565	0.42	-0.9
2,804,634	+		LRK54_RS12565	0.42	+0.1
2,804,634	+		LRK54_RS12565	0.42	-2.3
2,804,634	+		LRK54_RS12565	0.42	-1.5
2,804,634	+		LRK54_RS12565	0.42	-0.4
2,804,634	+		LRK54_RS12565	0.42	+0.1
2,804,634	+		LRK54_RS12565	0.42	-0.8
2,804,634	+		LRK54_RS12565	0.42	-0.9
2,804,634	+		LRK54_RS12565	0.42	-1.8
2,804,634	+		LRK54_RS12565	0.42	+0.1
2,804,635	-		LRK54_RS12565	0.42	-0.4
2,804,635	-		LRK54_RS12565	0.42	-0.1
2,804,635	-		LRK54_RS12565	0.42	-0.8
2,804,635	-		LRK54_RS12565	0.42	-0.7
2,804,635	-		LRK54_RS12565	0.42	-1.5
2,804,635	-		LRK54_RS12565	0.42	+1.6
2,804,635	-		LRK54_RS12565	0.42	+0.1
2,804,635	-		LRK54_RS12565	0.42	+1.4
2,804,635	-		LRK54_RS12565	0.42	+0.2
2,804,635	-		LRK54_RS12565	0.42	-2.6
2,804,635	-		LRK54_RS12565	0.42	+0.5
2,804,635	-		LRK54_RS12565	0.42	+0.4
2,804,635	-		LRK54_RS12565	0.42	-0.2
2,804,635	-		LRK54_RS12565	0.42	+2.6
2,804,635	-		LRK54_RS12565	0.42	-0.8
2,804,659	+		LRK54_RS12565	0.45	-0.5
2,804,659	+		LRK54_RS12565	0.45	-1.6
2,804,659	+		LRK54_RS12565	0.45	-1.7
2,804,659	+		LRK54_RS12565	0.45	-0.4
2,804,659	+		LRK54_RS12565	0.45	+0.2
2,804,659	+		LRK54_RS12565	0.45	-2.1
2,804,660	-		LRK54_RS12565	0.45	+1.6
2,804,660	-		LRK54_RS12565	0.45	+0.6
2,804,660	-		LRK54_RS12565	0.45	-1.2
2,804,660	-		LRK54_RS12565	0.45	+0.1
2,804,745	+		LRK54_RS12565	0.57	-0.4
2,804,746	-		LRK54_RS12565	0.58	-2.3
2,804,746	-		LRK54_RS12565	0.58	-0.7
2,804,808	+		LRK54_RS12565	0.66	-1.7
2,804,809	-		LRK54_RS12565	0.66	-0.4
2,804,809	-		LRK54_RS12565	0.66	-0.1
2,804,836	+		LRK54_RS12565	0.70	-0.4
2,804,836	+		LRK54_RS12565	0.70	+0.4
2,804,836	+		LRK54_RS12565	0.70	-2.2
2,804,836	+		LRK54_RS12565	0.70	+2.6
2,804,836	+		LRK54_RS12565	0.70	+0.4
2,804,836	+		LRK54_RS12565	0.70	-0.7
2,804,837	-		LRK54_RS12565	0.70	-0.9
2,804,837	-		LRK54_RS12565	0.70	-2.8
2,804,837	-		LRK54_RS12565	0.70	-0.5
2,804,837	-		LRK54_RS12565	0.70	-1.0
2,804,837	-		LRK54_RS12565	0.70	-1.2
2,804,837	-		LRK54_RS12565	0.70	+0.6
2,804,837	-		LRK54_RS12565	0.70	-1.9
2,804,837	-		LRK54_RS12565	0.70	-0.4
2,804,837	-		LRK54_RS12565	0.70	-0.5
2,804,874	+		LRK54_RS12565	0.76	-2.1
2,804,874	+		LRK54_RS12565	0.76	+0.9
2,804,874	+		LRK54_RS12565	0.76	-0.0
2,804,874	+		LRK54_RS12565	0.76	-0.3
2,804,874	+		LRK54_RS12565	0.76	-0.9
2,804,875	-		LRK54_RS12565	0.76	+0.1
2,804,883	+		LRK54_RS12565	0.77	-0.7
2,804,883	+		LRK54_RS12565	0.77	-1.8
2,804,883	+		LRK54_RS12565	0.77	+1.6
2,804,884	-		LRK54_RS12565	0.77	-1.2
2,804,902	+		LRK54_RS12565	0.79	-1.9
2,804,902	+		LRK54_RS12565	0.79	-0.4
2,804,902	+		LRK54_RS12565	0.79	-0.7
2,804,902	+		LRK54_RS12565	0.79	+0.4
2,804,902	+		LRK54_RS12565	0.79	+0.1
2,804,902	+		LRK54_RS12565	0.79	-0.8
2,804,902	+		LRK54_RS12565	0.79	-1.8
2,804,902	+		LRK54_RS12565	0.79	-1.8
2,804,902	+		LRK54_RS12565	0.79	+0.4
2,804,902	+		LRK54_RS12565	0.79	-0.3
2,804,902	+		LRK54_RS12565	0.79	+1.1
2,804,902	+		LRK54_RS12565	0.79	-1.9
2,804,902	+		LRK54_RS12565	0.79	+0.1
2,804,902	+		LRK54_RS12565	0.79	-0.3
2,804,902	+		LRK54_RS12565	0.79	+0.1
2,804,902	+		LRK54_RS12565	0.79	+0.8
2,804,903	-		LRK54_RS12565	0.80	+1.0
2,804,903	-		LRK54_RS12565	0.80	-0.3
2,804,903	-		LRK54_RS12565	0.80	-0.1
2,804,903	-		LRK54_RS12565	0.80	-0.5
2,804,903	-		LRK54_RS12565	0.80	-2.1
2,804,903	-		LRK54_RS12565	0.80	-0.1
2,804,903	-		LRK54_RS12565	0.80	-0.5
2,804,903	-		LRK54_RS12565	0.80	+0.7
2,804,903	-		LRK54_RS12565	0.80	-0.9
2,804,903	-		LRK54_RS12565	0.80	-0.8
2,804,903	-		LRK54_RS12565	0.80	-0.3
2,804,903	-		LRK54_RS12565	0.80	-0.6
2,804,944	+		LRK54_RS12565	0.85	+0.5
2,804,944	+		LRK54_RS12565	0.85	-2.8
2,804,944	+		LRK54_RS12565	0.85	-1.4
2,804,945	-		LRK54_RS12565	0.86	-0.8