Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07435

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
1,601,843	+		LRK54_RS07425	0.66	-0.5
1,601,843	+		LRK54_RS07425	0.66	+0.1
1,601,843	+		LRK54_RS07425	0.66	+0.0
1,601,843	+		LRK54_RS07425	0.66	+1.2
1,601,843	+		LRK54_RS07425	0.66	-0.6
1,601,844	-		LRK54_RS07425	0.66	+0.5
1,601,844	-		LRK54_RS07425	0.66	-0.3
1,601,883	+		LRK54_RS07425	0.69	+0.7
1,601,883	+		LRK54_RS07425	0.69	-1.7
1,601,883	+		LRK54_RS07425	0.69	+0.5
1,601,883	+		LRK54_RS07425	0.69	-0.7
1,601,883	+		LRK54_RS07425	0.69	-0.7
1,601,883	+		LRK54_RS07425	0.69	-0.5
1,601,883	+		LRK54_RS07425	0.69	+1.3
1,601,883	+		LRK54_RS07425	0.69	-1.4
1,601,883	+		LRK54_RS07425	0.69	+0.1
1,601,883	+		LRK54_RS07425	0.69	-1.3
1,601,884	-		LRK54_RS07425	0.69	+0.7
1,601,884	-		LRK54_RS07425	0.69	-1.7
1,601,884	-		LRK54_RS07425	0.69	-0.9
1,601,884	-		LRK54_RS07425	0.69	-0.5
1,601,884	-		LRK54_RS07425	0.69	-0.7
1,601,884	-		LRK54_RS07425	0.69	-0.4
1,601,884	-		LRK54_RS07425	0.69	-1.6
1,601,979	+		LRK54_RS07425	0.77	-0.9
1,601,980	-		LRK54_RS07425	0.77	-0.9
1,602,030	+		LRK54_RS07425	0.81	+2.5
1,602,031	-		LRK54_RS07425	0.81	-0.7
1,602,031	-		LRK54_RS07425	0.81	+0.1
1,602,031	-		LRK54_RS07425	0.81	+3.3
1,602,037	-		LRK54_RS07425	0.82	-0.6
1,602,037	-		LRK54_RS07425	0.82	+0.2
1,602,068	+		LRK54_RS07425	0.85	-2.7
1,602,068	+		LRK54_RS07425	0.85	-1.2
1,602,207	+				-1.9
1,602,207	+				+1.1
1,602,224	-				+0.1
1,602,226	-				-0.3
1,602,337	-				-0.5
1,602,543	-		LRK54_RS07430	0.61	-1.3
1,602,543	-		LRK54_RS07430	0.61	-0.7
1,602,609	-		LRK54_RS07430	0.78	-0.7
1,602,609	-		LRK54_RS07430	0.78	-0.7
1,602,609	-		LRK54_RS07430	0.78	+1.0
1,602,646	-		LRK54_RS07430	0.88	-0.3
1,602,646	-		LRK54_RS07430	0.88	-1.1
1,602,731	+				+0.4
1,602,731	+				-0.1
1,602,732	-				-0.9
1,602,732	-				+0.1
1,603,056	-		LRK54_RS07435	0.46	+2.3
1,603,076	+		LRK54_RS07435	0.49	-1.1
1,603,076	+		LRK54_RS07435	0.49	-0.5
1,603,077	-		LRK54_RS07435	0.49	+1.3
1,603,077	-		LRK54_RS07435	0.49	+1.0
1,603,241	+		LRK54_RS07435	0.71	+0.4
1,603,241	+		LRK54_RS07435	0.71	-0.8
1,603,241	+		LRK54_RS07435	0.71	+0.3
1,603,304	+		LRK54_RS07435	0.79	-1.6
1,603,304	+		LRK54_RS07435	0.79	-0.9
1,603,304	+		LRK54_RS07435	0.79	+0.1
1,603,304	+		LRK54_RS07435	0.79	-0.4
1,603,304	+		LRK54_RS07435	0.79	+1.2
1,603,304	+		LRK54_RS07435	0.79	+0.6
1,603,305	-		LRK54_RS07435	0.79	-0.2
1,603,305	-		LRK54_RS07435	0.79	+1.5
1,603,305	-		LRK54_RS07435	0.79	-2.7
1,603,305	-		LRK54_RS07435	0.79	-0.9
1,603,305	-		LRK54_RS07435	0.79	-2.4
1,603,305	-		LRK54_RS07435	0.79	-1.5
1,603,305	-		LRK54_RS07435	0.79	+0.8
1,603,305	-		LRK54_RS07435	0.79	-2.2
1,603,305	-		LRK54_RS07435	0.79	+0.1
1,603,305	-		LRK54_RS07435	0.79	-1.7
1,603,305	-		LRK54_RS07435	0.79	+0.4
1,603,305	-		LRK54_RS07435	0.79	-1.1
1,603,543	+				-0.5
1,603,543	+				-0.5
1,603,543	+				-1.7
1,603,543	+				+0.1
1,603,543	+				-0.5
1,603,543	+				-0.3
1,603,543	+				-0.7
1,603,543	+				+0.7
1,603,543	+				-0.9
1,603,543	+				-0.4
1,603,543	+				-0.1
1,603,543	+				-0.6
1,603,544	-				-2.0
1,603,544	-				-1.8
1,603,544	-				+0.6
1,603,544	-				-0.3
1,603,544	-				-0.3
1,603,579	+				-1.3
1,603,586	+				-0.1
1,603,586	+				-0.7
1,603,586	+				+0.5
1,603,586	+				+0.3
1,603,587	-				-1.9
1,603,595	-				-1.3
1,603,595	-				-2.2
1,603,595	-				-0.3
1,603,680	+				-0.2
1,603,680	+				-0.9
1,603,680	+				-0.7
1,603,680	+				-0.3
1,603,681	-				-1.7
1,603,681	-				+0.1
1,603,695	+				-0.5
1,603,696	-				-0.5
1,603,696	-				+0.9
1,603,964	+				+1.1
1,603,964	+				-0.2
1,603,965	-				+0.1
1,604,020	+				+0.6
1,604,020	+				+1.7
1,604,020	+				-1.5
1,604,020	+				-1.6
1,604,021	-				-0.5
1,604,021	-				-1.0
1,604,021	-				+0.7
1,604,038	+				+0.0
1,604,038	+				+0.1
1,604,039	-				-1.1
1,604,039	-				-1.2
1,604,039	-				-2.6
1,604,040	+				-0.6
1,604,040	+				+0.6
1,604,040	+				+1.1
1,604,040	+				+0.8
1,604,040	+				-1.0
1,604,040	+				+0.2
1,604,040	+				+0.3
1,604,041	-				-0.3
1,604,041	-				-0.8
1,604,041	-				-1.3
1,604,041	-				-0.9
1,604,041	-				+2.2
1,604,041	-				-0.8
1,604,041	-				-0.4
1,604,041	-				+0.2
1,604,041	-				+1.7
1,604,041	-				+0.9
1,604,041	-				-0.0
1,604,041	-				+0.1
1,604,042	-				-0.4
1,604,115	+				-1.0
1,604,121	+				-0.5
1,604,121	+				-0.5
1,604,122	-				+0.1
1,604,122	-				-0.8
1,604,167	+				+0.2
1,604,167	+				+0.1
1,604,167	+				-0.2
1,604,167	+				+0.7
1,604,167	+				-0.7
1,604,167	+				+0.5
1,604,167	+				+0.1
1,604,167	+				-0.4
1,604,167	+				-0.3
1,604,167	+				+0.1
1,604,167	+				+0.2
1,604,167	+				+0.2
1,604,167	+				-1.1
1,604,167	+				-0.7
1,604,167	+				-2.9
1,604,168	-				-0.6
1,604,168	-				+0.2
1,604,168	-				-1.3
1,604,168	-				+1.4
1,604,168	-				+0.1
1,604,168	-				+0.5
1,604,169	+				+0.1
1,604,169	+				-0.7
1,604,169	+				+1.0
1,604,169	+				-1.1
1,604,169	+				-2.6
1,604,170	-				-0.9
1,604,170	-				-0.0
1,604,170	-				+0.7
1,604,170	-				-0.0
1,604,170	-				-0.9
1,604,179	+				-2.7
1,604,179	+				-2.8
1,604,179	+				-0.3
1,604,179	+				-2.1
1,604,179	+				+0.1
1,604,179	+				+0.4
1,604,179	+				-0.6
1,604,179	+				-0.2
1,604,179	+				-0.7
1,604,179	+				+0.0
1,604,179	+				-1.5
1,604,179	+				+0.7
1,604,179	+				-0.2
1,604,180	-				+2.4
1,604,180	-				-0.3
1,604,180	-				+0.4
1,604,180	-				+0.0
1,604,180	-				-0.3
1,604,180	-				+0.8
1,604,180	-				+0.3
1,604,180	-				-0.0
1,604,180	-				+0.5
1,604,180	-				-1.2
1,604,180	-				-0.6
1,604,180	-				-0.5
1,604,207	+				-1.0
1,604,207	+				+0.3
1,604,207	+				+0.1
1,604,208	-				+0.2
1,604,208	-				+0.1
1,604,208	-				+0.3
1,604,335	+		LRK54_RS07440	0.24	+0.1
1,604,335	+		LRK54_RS07440	0.24	-1.0
1,604,335	+		LRK54_RS07440	0.24	-1.8
1,604,335	+		LRK54_RS07440	0.24	+0.0
1,604,335	+		LRK54_RS07440	0.24	-0.1
1,604,335	+		LRK54_RS07440	0.24	+0.8
1,604,335	+		LRK54_RS07440	0.24	+0.7
1,604,335	+		LRK54_RS07440	0.24	-1.6
1,604,335	+		LRK54_RS07440	0.24	+0.1
1,604,335	+		LRK54_RS07440	0.24	+0.3
1,604,335	+		LRK54_RS07440	0.24	+0.6
1,604,335	+		LRK54_RS07440	0.24	+0.9
1,604,336	-		LRK54_RS07440	0.24	+0.4
1,604,336	-		LRK54_RS07440	0.24	-0.6
1,604,336	-		LRK54_RS07440	0.24	+0.3
1,604,336	-		LRK54_RS07440	0.24	+0.4
1,604,336	-		LRK54_RS07440	0.24	-0.3
1,604,336	-		LRK54_RS07440	0.24	+1.7
1,604,336	-		LRK54_RS07440	0.24	+1.3
1,604,336	-		LRK54_RS07440	0.24	+0.4
1,604,336	-		LRK54_RS07440	0.24	-0.5
1,604,336	-		LRK54_RS07440	0.24	-0.4
1,604,336	-		LRK54_RS07440	0.24	-0.2
1,604,336	-		LRK54_RS07440	0.24	+0.1
1,604,336	-		LRK54_RS07440	0.24	+0.7
1,604,338	+		LRK54_RS07440	0.24	+0.4
1,604,338	+		LRK54_RS07440	0.24	+0.7
1,604,338	+		LRK54_RS07440	0.24	-0.5
1,604,338	+		LRK54_RS07440	0.24	+1.1
1,604,338	+		LRK54_RS07440	0.24	-1.2
1,604,338	+		LRK54_RS07440	0.24	-0.2
1,604,338	+		LRK54_RS07440	0.24	+0.6
1,604,338	+		LRK54_RS07440	0.24	-1.4
1,604,339	-		LRK54_RS07440	0.25	-0.4
1,604,339	-		LRK54_RS07440	0.25	+0.1
1,604,339	-		LRK54_RS07440	0.25	+1.4
1,604,339	-		LRK54_RS07440	0.25	-0.6
1,604,339	-		LRK54_RS07440	0.25	+0.5
1,604,339	-		LRK54_RS07440	0.25	-1.4
1,604,339	-		LRK54_RS07440	0.25	-0.9