Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06910

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
1,484,731	+		LRK54_RS06900	0.77	-1.8
1,484,746	-		LRK54_RS06900	0.79	+0.1
1,484,820	+		LRK54_RS06900	0.86	+0.1
1,484,820	+		LRK54_RS06900	0.86	+0.2
1,484,820	+		LRK54_RS06900	0.86	+0.7
1,484,820	+		LRK54_RS06900	0.86	-0.6
1,484,820	+		LRK54_RS06900	0.86	-0.4
1,484,820	+		LRK54_RS06900	0.86	+0.1
1,484,820	+		LRK54_RS06900	0.86	+0.3
1,484,820	+		LRK54_RS06900	0.86	-0.4
1,484,820	+		LRK54_RS06900	0.86	-0.0
1,484,820	+		LRK54_RS06900	0.86	-0.2
1,484,820	+		LRK54_RS06900	0.86	-0.2
1,484,821	-		LRK54_RS06900	0.86	+0.3
1,484,821	-		LRK54_RS06900	0.86	-1.0
1,485,016	+				+0.9
1,485,129	+		LRK54_RS06905	0.18	-1.1
1,485,129	+		LRK54_RS06905	0.18	+0.0
1,485,129	+		LRK54_RS06905	0.18	-2.3
1,485,129	+		LRK54_RS06905	0.18	-2.6
1,485,129	+		LRK54_RS06905	0.18	-2.8
1,485,129	+		LRK54_RS06905	0.18	-1.3
1,485,129	+		LRK54_RS06905	0.18	+1.0
1,485,129	+		LRK54_RS06905	0.18	+1.4
1,485,129	+		LRK54_RS06905	0.18	-2.7
1,485,129	+		LRK54_RS06905	0.18	-1.2
1,485,129	+		LRK54_RS06905	0.18	-1.4
1,485,129	+		LRK54_RS06905	0.18	-1.6
1,485,129	+		LRK54_RS06905	0.18	+0.7
1,485,129	+		LRK54_RS06905	0.18	+0.5
1,485,129	+		LRK54_RS06905	0.18	-0.3
1,485,129	+		LRK54_RS06905	0.18	-0.9
1,485,129	+		LRK54_RS06905	0.18	-1.5
1,485,129	+		LRK54_RS06905	0.18	-1.0
1,485,129	+		LRK54_RS06905	0.18	-2.0
1,485,129	+		LRK54_RS06905	0.18	+0.7
1,485,129	+		LRK54_RS06905	0.18	-2.2
1,485,129	+		LRK54_RS06905	0.18	-1.5
1,485,129	+		LRK54_RS06905	0.18	-1.6
1,485,130	-		LRK54_RS06905	0.18	-1.1
1,485,130	-		LRK54_RS06905	0.18	-0.9
1,485,130	-		LRK54_RS06905	0.18	-0.9
1,485,130	-		LRK54_RS06905	0.18	-0.9
1,485,130	-		LRK54_RS06905	0.18	-0.3
1,485,130	-		LRK54_RS06905	0.18	-2.6
1,485,130	-		LRK54_RS06905	0.18	+0.3
1,485,130	-		LRK54_RS06905	0.18	-1.1
1,485,130	-		LRK54_RS06905	0.18	+1.1
1,485,130	-		LRK54_RS06905	0.18	-1.6
1,485,130	-		LRK54_RS06905	0.18	-0.3
1,485,130	-		LRK54_RS06905	0.18	-0.3
1,485,130	-		LRK54_RS06905	0.18	-1.3
1,485,130	-		LRK54_RS06905	0.18	-1.6
1,485,130	-		LRK54_RS06905	0.18	+1.7
1,485,130	-		LRK54_RS06905	0.18	-2.2
1,485,130	-		LRK54_RS06905	0.18	-2.4
1,485,130	-		LRK54_RS06905	0.18	+1.7
1,485,130	-		LRK54_RS06905	0.18	+0.1
1,485,130	-		LRK54_RS06905	0.18	-1.6
1,485,130	-		LRK54_RS06905	0.18	-0.5
1,485,130	-		LRK54_RS06905	0.18	-0.6
1,485,130	-		LRK54_RS06905	0.18	-1.2
1,485,261	+		LRK54_RS06905	0.42	-2.1
1,485,261	+		LRK54_RS06905	0.42	+0.1
1,485,261	+		LRK54_RS06905	0.42	-1.8
1,485,261	+		LRK54_RS06905	0.42	-1.3
1,485,261	+		LRK54_RS06905	0.42	-1.3
1,485,261	+		LRK54_RS06905	0.42	-0.0
1,485,261	+		LRK54_RS06905	0.42	-3.0
1,485,262	-		LRK54_RS06905	0.43	-2.6
1,485,262	-		LRK54_RS06905	0.43	-1.2
1,485,262	-		LRK54_RS06905	0.43	-2.0
1,485,262	-		LRK54_RS06905	0.43	-1.4
1,485,262	-		LRK54_RS06905	0.43	+1.2
1,485,262	-		LRK54_RS06905	0.43	-1.3
1,485,262	-		LRK54_RS06905	0.43	-2.3
1,485,450	+		LRK54_RS06905	0.78	+0.4
1,485,451	-		LRK54_RS06905	0.78	+0.5
1,485,656	+				-0.3
1,485,674	+				-1.4
1,485,674	+				-1.9
1,485,674	+				-2.4
1,485,674	+				-1.9
1,485,674	+				-3.2
1,485,674	+				-0.6
1,485,675	-				-2.5
1,485,675	-				-1.3
1,485,675	-				+1.5
1,485,677	+				-1.4
1,485,677	+				-1.6
1,485,677	+				-1.5
1,485,677	+				-1.2
1,485,677	+				-1.8
1,485,677	+				-0.5
1,485,677	+				-0.8
1,485,677	+				-1.0
1,485,677	+				-0.7
1,485,677	+				+1.1
1,485,677	+				-1.7
1,485,677	+				-1.6
1,485,677	+				-3.4
1,485,677	+				-0.7
1,485,677	+				+1.7
1,485,677	+				-1.0
1,485,678	-				-0.1
1,485,678	-				-1.3
1,485,678	-				-2.5
1,485,678	-				-0.5
1,485,678	-				-1.1
1,485,678	-				-0.8
1,485,678	-				-1.1
1,485,678	-				+1.1
1,485,678	-				-0.8
1,485,678	-				-4.0
1,485,678	-				-0.5
1,485,678	-				-2.1
1,485,860	+		LRK54_RS06910	0.25	-1.5
1,485,860	+		LRK54_RS06910	0.25	-1.1
1,485,860	+		LRK54_RS06910	0.25	-1.7
1,485,860	+		LRK54_RS06910	0.25	+0.6
1,485,861	-		LRK54_RS06910	0.25	-2.1
1,485,861	-		LRK54_RS06910	0.25	-0.6
1,485,861	-		LRK54_RS06910	0.25	+0.1
1,485,861	-		LRK54_RS06910	0.25	-0.8
1,485,861	-		LRK54_RS06910	0.25	+0.1
1,485,861	-		LRK54_RS06910	0.25	-0.6
1,485,861	-		LRK54_RS06910	0.25	-0.3
1,485,861	-		LRK54_RS06910	0.25	-1.9
1,485,881	+		LRK54_RS06910	0.27	-1.1
1,485,881	+		LRK54_RS06910	0.27	+0.4
1,485,881	+		LRK54_RS06910	0.27	-2.5
1,485,882	-		LRK54_RS06910	0.27	+1.7
1,485,908	+		LRK54_RS06910	0.29	-0.9
1,485,908	+		LRK54_RS06910	0.29	-1.0
1,485,909	-		LRK54_RS06910	0.29	-1.1
1,485,909	-		LRK54_RS06910	0.29	+0.4
1,485,909	-		LRK54_RS06910	0.29	-1.5
1,485,909	-		LRK54_RS06910	0.29	-1.9
1,485,920	+		LRK54_RS06910	0.30	-0.6
1,485,920	+		LRK54_RS06910	0.30	-1.3
1,485,920	+		LRK54_RS06910	0.30	+1.1
1,485,920	+		LRK54_RS06910	0.30	+0.7
1,485,920	+		LRK54_RS06910	0.30	-0.6
1,485,920	+		LRK54_RS06910	0.30	+2.7
1,485,920	+		LRK54_RS06910	0.30	-1.4
1,485,920	+		LRK54_RS06910	0.30	-1.9
1,485,920	+		LRK54_RS06910	0.30	-3.4
1,485,920	+		LRK54_RS06910	0.30	+0.2
1,485,920	+		LRK54_RS06910	0.30	-1.6
1,485,920	+		LRK54_RS06910	0.30	-1.0
1,485,921	-		LRK54_RS06910	0.30	-1.1
1,485,921	-		LRK54_RS06910	0.30	+0.1
1,485,921	-		LRK54_RS06910	0.30	-0.3
1,485,921	-		LRK54_RS06910	0.30	-3.6
1,485,921	-		LRK54_RS06910	0.30	-0.8
1,485,921	-		LRK54_RS06910	0.30	-0.3
1,485,921	-		LRK54_RS06910	0.30	-0.6
1,485,921	-		LRK54_RS06910	0.30	-3.8
1,485,921	-		LRK54_RS06910	0.30	-0.8
1,485,921	-		LRK54_RS06910	0.30	-1.4
1,486,031	+		LRK54_RS06910	0.39	-0.9
1,486,031	+		LRK54_RS06910	0.39	-2.5
1,486,031	+		LRK54_RS06910	0.39	+0.7
1,486,031	+		LRK54_RS06910	0.39	-3.6
1,486,031	+		LRK54_RS06910	0.39	-0.8
1,486,031	+		LRK54_RS06910	0.39	-1.2
1,486,031	+		LRK54_RS06910	0.39	-2.2
1,486,031	+		LRK54_RS06910	0.39	-1.1
1,486,031	+		LRK54_RS06910	0.39	+0.1
1,486,032	-		LRK54_RS06910	0.40	+0.7
1,486,032	-		LRK54_RS06910	0.40	-0.7
1,486,032	-		LRK54_RS06910	0.40	-2.1
1,486,032	-		LRK54_RS06910	0.40	-1.6
1,486,032	-		LRK54_RS06910	0.40	-0.6
1,486,032	-		LRK54_RS06910	0.40	-2.1
1,486,032	-		LRK54_RS06910	0.40	+1.7
1,486,032	-		LRK54_RS06910	0.40	-1.3
1,486,136	+		LRK54_RS06910	0.48	+1.7
1,486,136	+		LRK54_RS06910	0.48	-1.3
1,486,136	+		LRK54_RS06910	0.48	-1.5
1,486,136	+		LRK54_RS06910	0.48	-1.1
1,486,136	+		LRK54_RS06910	0.48	-0.9
1,486,136	+		LRK54_RS06910	0.48	-0.5
1,486,136	+		LRK54_RS06910	0.48	-2.0
1,486,137	-		LRK54_RS06910	0.48	-1.7
1,486,137	-		LRK54_RS06910	0.48	-1.5
1,486,137	-		LRK54_RS06910	0.48	-1.7
1,486,137	-		LRK54_RS06910	0.48	-0.3
1,486,137	-		LRK54_RS06910	0.48	-0.2
1,486,137	-		LRK54_RS06910	0.48	-0.3
1,486,137	-		LRK54_RS06910	0.48	-0.9
1,486,137	-		LRK54_RS06910	0.48	-1.9
1,486,137	-		LRK54_RS06910	0.48	+1.1
1,486,265	+		LRK54_RS06910	0.59	-0.9
1,486,265	+		LRK54_RS06910	0.59	-2.2
1,486,265	+		LRK54_RS06910	0.59	-1.5
1,486,265	+		LRK54_RS06910	0.59	-1.0
1,486,266	-		LRK54_RS06910	0.59	-1.2
1,486,266	-		LRK54_RS06910	0.59	-0.9
1,486,266	-		LRK54_RS06910	0.59	-1.6
1,486,304	+		LRK54_RS06910	0.63	+2.1
1,486,304	+		LRK54_RS06910	0.63	-1.5
1,486,304	+		LRK54_RS06910	0.63	-3.1
1,486,304	+		LRK54_RS06910	0.63	-1.9
1,486,304	+		LRK54_RS06910	0.63	-0.9
1,486,304	+		LRK54_RS06910	0.63	-1.0
1,486,304	+		LRK54_RS06910	0.63	+0.1
1,486,304	+		LRK54_RS06910	0.63	-0.9
1,486,304	+		LRK54_RS06910	0.63	-2.1
1,486,304	+		LRK54_RS06910	0.63	+0.1
1,486,305	-		LRK54_RS06910	0.63	+0.7
1,486,305	-		LRK54_RS06910	0.63	-1.9
1,486,305	-		LRK54_RS06910	0.63	-3.1
1,486,305	-		LRK54_RS06910	0.63	-3.8
1,486,305	-		LRK54_RS06910	0.63	-1.3
1,486,305	-		LRK54_RS06910	0.63	-1.1
1,486,305	-		LRK54_RS06910	0.63	-0.3
1,486,305	-		LRK54_RS06910	0.63	-1.1
1,486,305	-		LRK54_RS06910	0.63	-0.3
1,486,305	-		LRK54_RS06910	0.63	+1.7
1,486,305	-		LRK54_RS06910	0.63	+0.1
1,486,305	-		LRK54_RS06910	0.63	-2.2
1,486,305	-		LRK54_RS06910	0.63	-2.4
1,486,305	-		LRK54_RS06910	0.63	-1.7
1,486,305	-		LRK54_RS06910	0.63	-3.8
1,486,305	-		LRK54_RS06910	0.63	-1.4
1,486,545	-		LRK54_RS06910	0.83	+0.7
1,486,803	+				+0.4
1,486,803	+				-0.5
1,486,804	-				-0.3
1,486,804	-				+1.1
1,486,804	-				-0.6
1,486,890	+		LRK54_RS06915	0.12	+0.9
1,486,890	+		LRK54_RS06915	0.12	-0.2
1,486,890	+		LRK54_RS06915	0.12	-1.1
1,486,890	+		LRK54_RS06915	0.12	-1.2
1,486,891	-		LRK54_RS06915	0.13	+1.0
1,486,891	-		LRK54_RS06915	0.13	-0.1
1,486,891	-		LRK54_RS06915	0.13	+2.3
1,486,971	+		LRK54_RS06915	0.31	-0.2
1,486,971	+		LRK54_RS06915	0.31	-0.5
1,486,971	+		LRK54_RS06915	0.31	+0.4
1,486,971	+		LRK54_RS06915	0.31	-0.9
1,486,971	+		LRK54_RS06915	0.31	-0.9
1,486,971	+		LRK54_RS06915	0.31	+0.8
1,486,972	-		LRK54_RS06915	0.31	+0.2
1,486,972	-		LRK54_RS06915	0.31	-1.3
1,486,972	-		LRK54_RS06915	0.31	+0.6
1,486,972	-		LRK54_RS06915	0.31	-2.7
1,487,088	+		LRK54_RS06915	0.58	-0.3
1,487,088	+		LRK54_RS06915	0.58	+0.9
1,487,088	+		LRK54_RS06915	0.58	-0.5
1,487,088	+		LRK54_RS06915	0.58	-2.1
1,487,089	-		LRK54_RS06915	0.58	-1.5
1,487,089	-		LRK54_RS06915	0.58	-2.4
1,487,089	-		LRK54_RS06915	0.58	-0.9
1,487,089	-		LRK54_RS06915	0.58	+0.7
1,487,274	+				+0.5
1,487,274	+				+1.3
1,487,274	+				-0.7
1,487,274	+				-1.3
1,487,274	+				+1.2
1,487,275	-				+0.3
1,487,275	-				+0.4
1,487,275	-				-0.9
1,487,275	-				-0.0
1,487,275	-				-1.6
1,487,417	+				-0.0
1,487,417	+				-0.3
1,487,417	+				+0.0
1,487,417	+				-0.9
1,487,417	+				+0.5
1,487,417	+				-0.4
1,487,417	+				-2.0
1,487,417	+				-0.4
1,487,417	+				+0.7
1,487,417	+				+0.3
1,487,417	+				-1.9
1,487,417	+				+0.6
1,487,417	+				+0.6
1,487,417	+				+1.5
1,487,417	+				-0.8
1,487,417	+				+1.0
1,487,417	+				-0.3
1,487,417	+				-1.4
1,487,417	+				+1.7
1,487,417	+				-0.1
1,487,417	+				+0.4
1,487,417	+				-1.3
1,487,417	+				-0.6
1,487,418	-				+1.1
1,487,418	-				+0.7
1,487,418	-				+0.7
1,487,418	-				-1.6
1,487,418	-				-1.2
1,487,418	-				-1.2
1,487,418	-				-0.1
1,487,418	-				-0.0
1,487,418	-				-0.9
1,487,418	-				-0.7
1,487,418	-				+0.4
1,487,418	-				+1.7
1,487,418	-				+0.6
1,487,418	-				+0.2
1,487,418	-				+0.1
1,487,418	-				-0.2
1,487,418	-				+0.3
1,487,418	-				+0.6
1,487,418	-				+0.0
1,487,418	-				-1.9
1,487,418	-				-0.1
1,487,418	-				-1.2
1,487,418	-				-1.8
1,487,418	-				+0.3
1,487,434	+				+0.1
1,487,434	+				+0.8
1,487,434	+				-0.3
1,487,434	+				+0.5
1,487,434	+				+0.4
1,487,434	+				+1.4
1,487,434	+				+0.8
1,487,434	+				-0.3
1,487,434	+				+0.4
1,487,434	+				-0.2
1,487,434	+				+0.4
1,487,434	+				-0.3
1,487,434	+				+0.3
1,487,434	+				+0.4
1,487,434	+				+2.2
1,487,434	+				-0.1
1,487,434	+				-0.2
1,487,434	+				+0.4
1,487,434	+				-0.4
1,487,434	+				-2.4
1,487,434	+				+0.1
1,487,435	-				-0.9
1,487,435	-				-0.6
1,487,435	-				-0.6
1,487,435	-				+0.3
1,487,435	-				+0.9
1,487,435	-				+0.1
1,487,435	-				-1.4
1,487,435	-				-0.1
1,487,435	-				+0.3
1,487,435	-				-0.4
1,487,435	-				-0.1
1,487,435	-				+0.1
1,487,435	-				+2.0