Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06485

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
1,393,556	+				-2.5
1,393,556	+				+0.1
1,393,556	+				-2.8
1,393,556	+				-0.6
1,393,556	+				+1.7
1,393,556	+				+0.7
1,393,556	+				-1.8
1,393,556	+				-3.1
1,393,556	+				-0.6
1,393,556	+				+0.1
1,393,556	+				-2.1
1,393,556	+				-3.1
1,393,556	+				+0.1
1,393,556	+				-3.2
1,393,556	+				+0.1
1,393,556	+				-1.5
1,393,556	+				-2.6
1,393,556	+				-0.3
1,393,556	+				-0.9
1,393,556	+				-2.2
1,393,557	-				-0.3
1,393,557	-				-1.8
1,393,557	-				-0.1
1,393,557	-				-0.9
1,393,557	-				-1.0
1,393,557	-				+0.6
1,393,557	-				-1.1
1,393,557	-				+0.6
1,393,557	-				-0.9
1,393,557	-				-0.1
1,393,557	-				-0.4
1,393,557	-				-0.3
1,393,557	-				+0.3
1,393,557	-				+0.6
1,393,557	-				-2.1
1,393,557	-				+0.7
1,393,557	-				-0.5
1,393,557	-				-0.3
1,393,557	-				+0.7
1,393,557	-				-0.8
1,393,557	-				-1.1
1,393,557	-				+1.1
1,393,557	-				+0.9
1,393,557	-				-0.6
1,393,557	-				-0.3
1,393,557	-				-0.0
1,393,557	-				+1.4
1,393,557	-				-0.5
1,393,557	-				+1.1
1,393,557	-				-1.6
1,393,557	-				-0.4
1,393,557	-				-0.7
1,393,696	+		LRK54_RS06480	0.22	+0.3
1,393,696	+		LRK54_RS06480	0.22	-1.9
1,393,696	+		LRK54_RS06480	0.22	-0.0
1,393,696	+		LRK54_RS06480	0.22	-0.9
1,393,696	+		LRK54_RS06480	0.22	+0.3
1,393,696	+		LRK54_RS06480	0.22	-1.5
1,393,697	-		LRK54_RS06480	0.22	+0.7
1,393,697	-		LRK54_RS06480	0.22	-0.2
1,393,697	-		LRK54_RS06480	0.22	-2.9
1,393,697	-		LRK54_RS06480	0.22	+0.4
1,393,697	-		LRK54_RS06480	0.22	+1.3
1,393,697	-		LRK54_RS06480	0.22	+3.3
1,393,697	-		LRK54_RS06480	0.22	+0.1
1,393,724	+		LRK54_RS06480	0.26	-0.4
1,393,724	+		LRK54_RS06480	0.26	-1.9
1,393,724	+		LRK54_RS06480	0.26	-1.3
1,393,724	+		LRK54_RS06480	0.26	-0.3
1,393,725	-		LRK54_RS06480	0.27	+0.1
1,393,725	-		LRK54_RS06480	0.27	+1.1
1,393,725	-		LRK54_RS06480	0.27	-0.2
1,393,725	-		LRK54_RS06480	0.27	+0.9
1,393,725	-		LRK54_RS06480	0.27	-1.3
1,393,725	-		LRK54_RS06480	0.27	-2.0
1,393,845	+		LRK54_RS06480	0.46	-1.6
1,393,847	+		LRK54_RS06480	0.47	-0.1
1,393,847	+		LRK54_RS06480	0.47	-2.8
1,393,847	+		LRK54_RS06480	0.47	-1.6
1,393,847	+		LRK54_RS06480	0.47	-1.5
1,393,847	+		LRK54_RS06480	0.47	+0.1
1,393,847	+		LRK54_RS06480	0.47	-0.3
1,393,847	+		LRK54_RS06480	0.47	-1.6
1,393,847	+		LRK54_RS06480	0.47	+0.1
1,393,847	+		LRK54_RS06480	0.47	-0.5
1,393,847	+		LRK54_RS06480	0.47	+0.7
1,393,848	-		LRK54_RS06480	0.47	+1.1
1,393,848	-		LRK54_RS06480	0.47	+0.4
1,393,848	-		LRK54_RS06480	0.47	+0.2
1,393,848	-		LRK54_RS06480	0.47	+0.7
1,393,848	-		LRK54_RS06480	0.47	+0.9
1,393,848	-		LRK54_RS06480	0.47	-0.3
1,393,848	-		LRK54_RS06480	0.47	+1.0
1,393,848	-		LRK54_RS06480	0.47	+0.4
1,393,848	-		LRK54_RS06480	0.47	-0.6
1,393,848	-		LRK54_RS06480	0.47	-0.3
1,394,006	+		LRK54_RS06480	0.73	+0.7
1,394,006	+		LRK54_RS06480	0.73	-0.6
1,394,006	+		LRK54_RS06480	0.73	+0.7
1,394,006	+		LRK54_RS06480	0.73	+1.1
1,394,006	+		LRK54_RS06480	0.73	-0.2
1,394,006	+		LRK54_RS06480	0.73	+0.5
1,394,006	+		LRK54_RS06480	0.73	+1.1
1,394,006	+		LRK54_RS06480	0.73	+1.7
1,394,006	+		LRK54_RS06480	0.73	+0.5
1,394,006	+		LRK54_RS06480	0.73	+0.3
1,394,006	+		LRK54_RS06480	0.73	-0.3
1,394,006	+		LRK54_RS06480	0.73	+0.3
1,394,006	+		LRK54_RS06480	0.73	+1.5
1,394,006	+		LRK54_RS06480	0.73	-0.6
1,394,006	+		LRK54_RS06480	0.73	-1.0
1,394,006	+		LRK54_RS06480	0.73	+1.1
1,394,006	+		LRK54_RS06480	0.73	+0.5
1,394,006	+		LRK54_RS06480	0.73	-0.9
1,394,006	+		LRK54_RS06480	0.73	+0.7
1,394,006	+		LRK54_RS06480	0.73	+0.1
1,394,006	+		LRK54_RS06480	0.73	+3.7
1,394,006	+		LRK54_RS06480	0.73	+1.1
1,394,006	+		LRK54_RS06480	0.73	+0.1
1,394,006	+		LRK54_RS06480	0.73	-0.6
1,394,007	-		LRK54_RS06480	0.73	+1.3
1,394,007	-		LRK54_RS06480	0.73	-0.3
1,394,007	-		LRK54_RS06480	0.73	+1.3
1,394,007	-		LRK54_RS06480	0.73	+0.4
1,394,007	-		LRK54_RS06480	0.73	-1.1
1,394,007	-		LRK54_RS06480	0.73	-0.5
1,394,007	-		LRK54_RS06480	0.73	-0.9
1,394,007	-		LRK54_RS06480	0.73	+0.0
1,394,007	-		LRK54_RS06480	0.73	+0.4
1,394,007	-		LRK54_RS06480	0.73	+1.7
1,394,007	-		LRK54_RS06480	0.73	+0.1
1,394,007	-		LRK54_RS06480	0.73	+0.1
1,394,007	-		LRK54_RS06480	0.73	-0.3
1,394,007	-		LRK54_RS06480	0.73	+1.0
1,394,007	-		LRK54_RS06480	0.73	-1.6
1,394,007	-		LRK54_RS06480	0.73	+0.6
1,394,007	-		LRK54_RS06480	0.73	+0.3
1,394,007	-		LRK54_RS06480	0.73	+0.7
1,394,007	-		LRK54_RS06480	0.73	-0.6
1,394,007	-		LRK54_RS06480	0.73	-0.1
1,394,189	+				-0.6
1,394,189	+				+0.7
1,394,190	-				-0.1
1,394,654	+				+1.1
1,394,655	-				+0.8
1,394,655	-				-0.5
1,394,655	-				+1.1
1,394,878	-		LRK54_RS06490	0.18	-0.5
1,394,878	-		LRK54_RS06490	0.18	+0.1
1,394,878	-		LRK54_RS06490	0.18	+0.2
1,394,878	-		LRK54_RS06490	0.18	-0.9
1,394,904	-		LRK54_RS06490	0.20	+0.7
1,394,904	-		LRK54_RS06490	0.20	-1.9
1,394,904	-		LRK54_RS06490	0.20	-1.3
1,394,904	-		LRK54_RS06490	0.20	-0.6
1,394,904	-		LRK54_RS06490	0.20	-0.7
1,394,904	-		LRK54_RS06490	0.20	-2.9
1,395,012	-		LRK54_RS06490	0.28	+0.1
1,395,012	-		LRK54_RS06490	0.28	-2.5
1,395,012	-		LRK54_RS06490	0.28	-1.1
1,395,012	-		LRK54_RS06490	0.28	-1.8
1,395,012	-		LRK54_RS06490	0.28	-0.3
1,395,012	-		LRK54_RS06490	0.28	-0.8
1,395,012	-		LRK54_RS06490	0.28	-1.7
1,395,012	-		LRK54_RS06490	0.28	-1.3
1,395,012	-		LRK54_RS06490	0.28	-1.6
1,395,012	-		LRK54_RS06490	0.28	-2.8
1,395,012	-		LRK54_RS06490	0.28	-0.0
1,395,012	-		LRK54_RS06490	0.28	-1.2
1,395,030	-		LRK54_RS06490	0.30	-2.8
1,395,030	-		LRK54_RS06490	0.30	-1.1
1,395,030	-		LRK54_RS06490	0.30	-0.7
1,395,030	-		LRK54_RS06490	0.30	-0.9
1,395,030	-		LRK54_RS06490	0.30	-1.6
1,395,030	-		LRK54_RS06490	0.30	-2.6
1,395,030	-		LRK54_RS06490	0.30	-0.9
1,395,045	-		LRK54_RS06490	0.31	-2.7
1,395,045	-		LRK54_RS06490	0.31	-0.7
1,395,045	-		LRK54_RS06490	0.31	-1.6
1,395,045	-		LRK54_RS06490	0.31	+0.7
1,395,045	-		LRK54_RS06490	0.31	-0.9
1,395,045	-		LRK54_RS06490	0.31	-0.7
1,395,045	-		LRK54_RS06490	0.31	-1.8
1,395,045	-		LRK54_RS06490	0.31	-1.2
1,395,045	-		LRK54_RS06490	0.31	+0.1
1,395,045	-		LRK54_RS06490	0.31	-1.4
1,395,045	-		LRK54_RS06490	0.31	-2.2
1,395,045	-		LRK54_RS06490	0.31	-0.4
1,395,045	-		LRK54_RS06490	0.31	+0.2
1,395,045	-		LRK54_RS06490	0.31	-0.9
1,395,045	-		LRK54_RS06490	0.31	-1.5
1,395,045	-		LRK54_RS06490	0.31	-0.8
1,395,276	-		LRK54_RS06490	0.50	-0.7
1,395,276	-		LRK54_RS06490	0.50	-0.1
1,395,276	-		LRK54_RS06490	0.50	-2.0
1,395,276	-		LRK54_RS06490	0.50	-1.6
1,395,339	-		LRK54_RS06490	0.55	-1.7
1,395,339	-		LRK54_RS06490	0.55	-0.5
1,395,339	-		LRK54_RS06490	0.55	-1.9
1,395,339	-		LRK54_RS06490	0.55	-1.6
1,395,339	-		LRK54_RS06490	0.55	-1.7
1,395,339	-		LRK54_RS06490	0.55	-1.9
1,395,339	-		LRK54_RS06490	0.55	-2.4
1,395,339	-		LRK54_RS06490	0.55	-2.1
1,395,339	-		LRK54_RS06490	0.55	-2.5
1,395,339	-		LRK54_RS06490	0.55	-1.7
1,395,339	-		LRK54_RS06490	0.55	-1.3
1,395,339	-		LRK54_RS06490	0.55	-1.3
1,395,339	-		LRK54_RS06490	0.55	-0.7
1,395,339	-		LRK54_RS06490	0.55	-3.2
1,395,339	-		LRK54_RS06490	0.55	-1.6
1,395,339	-		LRK54_RS06490	0.55	-1.8
1,395,339	-		LRK54_RS06490	0.55	-2.3
1,395,339	-		LRK54_RS06490	0.55	-1.4
1,395,408	-		LRK54_RS06490	0.60	-1.3
1,395,408	-		LRK54_RS06490	0.60	-2.9
1,395,408	-		LRK54_RS06490	0.60	-1.7
1,395,408	-		LRK54_RS06490	0.60	-2.6
1,395,408	-		LRK54_RS06490	0.60	-0.7
1,395,408	-		LRK54_RS06490	0.60	-0.9
1,395,503	+		LRK54_RS06490	0.68	-0.9
1,395,503	+		LRK54_RS06490	0.68	-1.0
1,395,504	-		LRK54_RS06490	0.68	-1.4
1,395,504	-		LRK54_RS06490	0.68	-0.7
1,395,504	-		LRK54_RS06490	0.68	-1.3
1,395,504	-		LRK54_RS06490	0.68	-1.1
1,395,504	-		LRK54_RS06490	0.68	-1.5
1,395,656	+		LRK54_RS06490	0.80	-2.0
1,395,656	+		LRK54_RS06490	0.80	-1.0