Experiment: R2A with Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00325 and LRK54_RS00330 are separated by 203 nucleotides LRK54_RS00330 and LRK54_RS00335 are separated by 106 nucleotides LRK54_RS00335 and LRK54_RS00340 are separated by 59 nucleotides
LRK54_RS00325: LRK54_RS00325 - ATP-binding cassette domain-containing protein, at 73,937 to 75,958
_RS00325
LRK54_RS00330: LRK54_RS00330 - hypothetical protein, at 76,162 to 76,527
_RS00330
LRK54_RS00335: LRK54_RS00335 - agmatine deiminase family protein, at 76,634 to 77,671
_RS00335
LRK54_RS00340: LRK54_RS00340 - carbon-nitrogen hydrolase, at 77,731 to 78,621
_RS00340
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.711 kb on + strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.712 kb on - strand, within LRK54_RS00325 at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.893 kb on + strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 75.894 kb on - strand at 76.010 kb on - strand at 76.010 kb on - strand at 76.010 kb on - strand at 76.024 kb on + strand at 76.025 kb on - strand at 76.025 kb on - strand at 76.025 kb on - strand at 76.025 kb on - strand at 76.106 kb on + strand at 76.106 kb on + strand at 76.107 kb on - strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.121 kb on + strand at 76.122 kb on - strand at 76.122 kb on - strand at 76.122 kb on - strand at 76.122 kb on - strand at 76.122 kb on - strand at 76.122 kb on - strand at 76.122 kb on - strand at 76.136 kb on + strand at 76.136 kb on + strand at 76.136 kb on + strand at 76.136 kb on + strand at 76.136 kb on + strand at 76.136 kb on + strand at 76.136 kb on + strand at 76.136 kb on + strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.137 kb on - strand at 76.429 kb on + strand, within LRK54_RS00330 at 76.430 kb on - strand, within LRK54_RS00330 at 76.430 kb on - strand, within LRK54_RS00330 at 76.430 kb on - strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.445 kb on + strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.446 kb on - strand, within LRK54_RS00330 at 76.447 kb on + strand, within LRK54_RS00330 at 76.447 kb on + strand, within LRK54_RS00330 at 76.447 kb on + strand, within LRK54_RS00330 at 76.447 kb on + strand, within LRK54_RS00330 at 76.447 kb on + strand, within LRK54_RS00330 at 76.447 kb on + strand, within LRK54_RS00330 at 76.447 kb on + strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.448 kb on - strand, within LRK54_RS00330 at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.597 kb on + strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 76.598 kb on - strand at 77.683 kb on + strand at 77.684 kb on - strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 250 mM remove 75,711 + LRK54_RS00325 0.88 +0.3 75,711 + LRK54_RS00325 0.88 -1.9 75,711 + LRK54_RS00325 0.88 -1.3 75,711 + LRK54_RS00325 0.88 -0.1 75,711 + LRK54_RS00325 0.88 -1.1 75,711 + LRK54_RS00325 0.88 +0.7 75,711 + LRK54_RS00325 0.88 +0.2 75,711 + LRK54_RS00325 0.88 -1.0 75,711 + LRK54_RS00325 0.88 -0.8 75,711 + LRK54_RS00325 0.88 +3.5 75,711 + LRK54_RS00325 0.88 +1.1 75,711 + LRK54_RS00325 0.88 -1.0 75,711 + LRK54_RS00325 0.88 +0.2 75,711 + LRK54_RS00325 0.88 +0.3 75,711 + LRK54_RS00325 0.88 -0.2 75,712 - LRK54_RS00325 0.88 -0.1 75,712 - LRK54_RS00325 0.88 -0.3 75,712 - LRK54_RS00325 0.88 +1.0 75,712 - LRK54_RS00325 0.88 +0.0 75,712 - LRK54_RS00325 0.88 +0.1 75,712 - LRK54_RS00325 0.88 +0.3 75,712 - LRK54_RS00325 0.88 +0.0 75,712 - LRK54_RS00325 0.88 -0.2 75,712 - LRK54_RS00325 0.88 -1.0 75,712 - LRK54_RS00325 0.88 +1.2 75,712 - LRK54_RS00325 0.88 +0.1 75,712 - LRK54_RS00325 0.88 -0.9 75,712 - LRK54_RS00325 0.88 -1.9 75,893 + +1.3 75,893 + -0.3 75,893 + +0.5 75,893 + +1.1 75,893 + +0.3 75,893 + -0.7 75,893 + +0.1 75,893 + +0.7 75,893 + -1.7 75,893 + +0.9 75,893 + +1.1 75,893 + -0.1 75,893 + -0.1 75,893 + -0.3 75,893 + +0.4 75,893 + -0.3 75,893 + -0.8 75,893 + -1.1 75,893 + +0.3 75,893 + -1.5 75,893 + +1.2 75,893 + +0.1 75,894 - -0.7 75,894 - -0.5 75,894 - -1.1 75,894 - -1.3 75,894 - +0.1 75,894 - +0.3 75,894 - +0.1 75,894 - -0.2 75,894 - -0.6 75,894 - +0.1 75,894 - +0.2 75,894 - -0.7 75,894 - +0.7 75,894 - +1.4 75,894 - +0.9 75,894 - +0.3 75,894 - -1.2 76,010 - +0.7 76,010 - +0.1 76,010 - +0.0 76,024 + +0.4 76,025 - -0.7 76,025 - -2.2 76,025 - +1.7 76,025 - -1.3 76,106 + +0.6 76,106 + +0.1 76,107 - +0.1 76,121 + +0.0 76,121 + +0.5 76,121 + +0.1 76,121 + -0.4 76,121 + -1.1 76,121 + -2.0 76,121 + -0.0 76,121 + +0.2 76,121 + -0.3 76,122 - +0.5 76,122 - -0.1 76,122 - +0.8 76,122 - +1.1 76,122 - -0.5 76,122 - +0.0 76,122 - -1.2 76,136 + -0.4 76,136 + -0.1 76,136 + -1.1 76,136 + -0.7 76,136 + +0.1 76,136 + -0.0 76,136 + +1.2 76,136 + -1.5 76,137 - +0.7 76,137 - +1.7 76,137 - -0.3 76,137 - -0.2 76,137 - -0.9 76,137 - -0.6 76,137 - +0.4 76,137 - +2.1 76,137 - -0.5 76,137 - -1.1 76,429 + LRK54_RS00330 0.73 +0.0 76,430 - LRK54_RS00330 0.73 -2.1 76,430 - LRK54_RS00330 0.73 -0.1 76,430 - LRK54_RS00330 0.73 -1.9 76,445 + LRK54_RS00330 0.77 +2.0 76,445 + LRK54_RS00330 0.77 +0.1 76,445 + LRK54_RS00330 0.77 +0.3 76,445 + LRK54_RS00330 0.77 -0.7 76,445 + LRK54_RS00330 0.77 +0.1 76,445 + LRK54_RS00330 0.77 +0.5 76,445 + LRK54_RS00330 0.77 +0.6 76,445 + LRK54_RS00330 0.77 +0.1 76,445 + LRK54_RS00330 0.77 +2.0 76,445 + LRK54_RS00330 0.77 +0.7 76,445 + LRK54_RS00330 0.77 -0.8 76,445 + LRK54_RS00330 0.77 -1.4 76,445 + LRK54_RS00330 0.77 +0.3 76,445 + LRK54_RS00330 0.77 -1.1 76,445 + LRK54_RS00330 0.77 +0.3 76,445 + LRK54_RS00330 0.77 -1.1 76,446 - LRK54_RS00330 0.78 -1.6 76,446 - LRK54_RS00330 0.78 -0.6 76,446 - LRK54_RS00330 0.78 +0.3 76,446 - LRK54_RS00330 0.78 -0.8 76,446 - LRK54_RS00330 0.78 +0.9 76,446 - LRK54_RS00330 0.78 +1.3 76,446 - LRK54_RS00330 0.78 -0.0 76,446 - LRK54_RS00330 0.78 +0.1 76,446 - LRK54_RS00330 0.78 -1.1 76,446 - LRK54_RS00330 0.78 -0.3 76,446 - LRK54_RS00330 0.78 -0.8 76,446 - LRK54_RS00330 0.78 -2.3 76,446 - LRK54_RS00330 0.78 +0.1 76,446 - LRK54_RS00330 0.78 -0.4 76,446 - LRK54_RS00330 0.78 +1.7 76,446 - LRK54_RS00330 0.78 -0.8 76,446 - LRK54_RS00330 0.78 +0.3 76,446 - LRK54_RS00330 0.78 +0.1 76,446 - LRK54_RS00330 0.78 -0.8 76,446 - LRK54_RS00330 0.78 -0.9 76,446 - LRK54_RS00330 0.78 -1.7 76,446 - LRK54_RS00330 0.78 -2.3 76,446 - LRK54_RS00330 0.78 +0.3 76,446 - LRK54_RS00330 0.78 -0.7 76,446 - LRK54_RS00330 0.78 +0.8 76,446 - LRK54_RS00330 0.78 +0.3 76,446 - LRK54_RS00330 0.78 +0.3 76,447 + LRK54_RS00330 0.78 -0.5 76,447 + LRK54_RS00330 0.78 -0.1 76,447 + LRK54_RS00330 0.78 -1.3 76,447 + LRK54_RS00330 0.78 +0.2 76,447 + LRK54_RS00330 0.78 -1.4 76,447 + LRK54_RS00330 0.78 -0.5 76,447 + LRK54_RS00330 0.78 +0.6 76,448 - LRK54_RS00330 0.78 -0.6 76,448 - LRK54_RS00330 0.78 -0.1 76,448 - LRK54_RS00330 0.78 +0.3 76,448 - LRK54_RS00330 0.78 -1.0 76,448 - LRK54_RS00330 0.78 +0.2 76,448 - LRK54_RS00330 0.78 +1.5 76,448 - LRK54_RS00330 0.78 +1.4 76,448 - LRK54_RS00330 0.78 -0.4 76,448 - LRK54_RS00330 0.78 +0.7 76,448 - LRK54_RS00330 0.78 -1.7 76,448 - LRK54_RS00330 0.78 -1.1 76,448 - LRK54_RS00330 0.78 +0.7 76,597 + -1.9 76,597 + -1.9 76,597 + -0.6 76,597 + +0.2 76,597 + -0.6 76,597 + +0.3 76,597 + +0.4 76,597 + +0.6 76,597 + -0.3 76,597 + -1.9 76,597 + -0.8 76,597 + -0.3 76,597 + -0.1 76,597 + -0.7 76,597 + -0.7 76,597 + -1.8 76,597 + -0.7 76,597 + -0.2 76,597 + -0.3 76,597 + +0.5 76,598 - +0.4 76,598 - +0.1 76,598 - -0.7 76,598 - +1.7 76,598 - +0.1 76,598 - +0.6 76,598 - +0.3 76,598 - -2.1 76,598 - +0.6 76,598 - -1.6 76,598 - -1.5 76,598 - +3.3 76,598 - -0.2 76,598 - -0.8 77,683 + +1.3 77,684 - -1.3 78,619 + +0.3 78,619 + -1.1 78,619 + +0.5 78,619 + +0.9 78,619 + +1.1 78,620 - -0.4 78,620 - -0.3 78,620 - +0.1 78,620 - +1.4 78,620 - -1.8 78,620 - -0.7 78,620 - -0.9
Or see this region's nucleotide sequence