Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1162

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1159 and Ga0059261_1160 overlap by 1 nucleotidesGa0059261_1160 and Ga0059261_1161 are separated by 18 nucleotidesGa0059261_1161 and Ga0059261_1162 overlap by 4 nucleotidesGa0059261_1162 and Ga0059261_1163 are separated by 152 nucleotidesGa0059261_1163 and Ga0059261_1164 are separated by 104 nucleotides Ga0059261_1159: Ga0059261_1159 - Asparaginase, at 1,186,535 to 1,188,454 _1159 Ga0059261_1160: Ga0059261_1160 - Transcriptional regulators, at 1,188,454 to 1,188,897 _1160 Ga0059261_1161: Ga0059261_1161 - Cu(I)-responsive transcriptional regulator, at 1,188,916 to 1,189,413 _1161 Ga0059261_1162: Ga0059261_1162 - copper-(or silver)-translocating P-type ATPase, at 1,189,410 to 1,191,944 _1162 Ga0059261_1163: Ga0059261_1163 - Copper chaperone, at 1,192,097 to 1,192,294 _1163 Ga0059261_1164: Ga0059261_1164 - Glycosyl hydrolases family 6, at 1,192,399 to 1,193,628 _1164 Position (kb) 1189 1190 1191 1192Strain fitness (log2 ratio) -2 -1 0 1at 1188.574 kb on + strand, within Ga0059261_1160at 1188.574 kb on + strand, within Ga0059261_1160at 1188.619 kb on + strand, within Ga0059261_1160at 1188.619 kb on + strand, within Ga0059261_1160at 1188.619 kb on + strand, within Ga0059261_1160at 1188.620 kb on - strand, within Ga0059261_1160at 1188.620 kb on - strand, within Ga0059261_1160at 1188.620 kb on - strand, within Ga0059261_1160at 1188.620 kb on - strand, within Ga0059261_1160at 1188.620 kb on - strand, within Ga0059261_1160at 1188.620 kb on - strand, within Ga0059261_1160at 1188.620 kb on - strand, within Ga0059261_1160at 1188.621 kb on + strand, within Ga0059261_1160at 1188.621 kb on + strand, within Ga0059261_1160at 1188.621 kb on + strand, within Ga0059261_1160at 1188.621 kb on + strandat 1188.621 kb on + strand, within Ga0059261_1160at 1188.622 kb on - strand, within Ga0059261_1160at 1188.622 kb on - strand, within Ga0059261_1160at 1188.622 kb on - strand, within Ga0059261_1160at 1188.622 kb on - strand, within Ga0059261_1160at 1188.622 kb on - strand, within Ga0059261_1160at 1188.622 kb on - strand, within Ga0059261_1160at 1188.622 kb on - strand, within Ga0059261_1160at 1188.772 kb on + strandat 1188.772 kb on + strand, within Ga0059261_1160at 1188.772 kb on + strand, within Ga0059261_1160at 1188.773 kb on - strand, within Ga0059261_1160at 1188.773 kb on - strand, within Ga0059261_1160at 1188.773 kb on - strand, within Ga0059261_1160at 1188.774 kb on + strand, within Ga0059261_1160at 1188.774 kb on + strand, within Ga0059261_1160at 1188.774 kb on + strand, within Ga0059261_1160at 1188.775 kb on - strand, within Ga0059261_1160at 1188.775 kb on - strand, within Ga0059261_1160at 1188.775 kb on - strand, within Ga0059261_1160at 1188.775 kb on - strand, within Ga0059261_1160at 1189.129 kb on - strand, within Ga0059261_1161at 1189.299 kb on - strand, within Ga0059261_1161at 1189.299 kb on - strand, within Ga0059261_1161at 1189.299 kb on - strand, within Ga0059261_1161at 1189.299 kb on - strand, within Ga0059261_1161at 1189.299 kb on - strand, within Ga0059261_1161at 1189.299 kb on - strand, within Ga0059261_1161at 1189.307 kb on + strand, within Ga0059261_1161at 1189.355 kb on + strand, within Ga0059261_1161at 1189.355 kb on + strand, within Ga0059261_1161at 1189.355 kb on + strand, within Ga0059261_1161at 1189.356 kb on - strand, within Ga0059261_1161at 1189.356 kb on - strand, within Ga0059261_1161at 1189.356 kb on - strand, within Ga0059261_1161at 1189.358 kb on + strand, within Ga0059261_1161at 1189.359 kb on - strand, within Ga0059261_1161at 1189.393 kb on - strandat 1189.393 kb on - strandat 1189.597 kb on + strandat 1189.597 kb on + strandat 1189.598 kb on - strandat 1189.598 kb on - strandat 1189.627 kb on - strandat 1189.728 kb on - strand, within Ga0059261_1162at 1190.047 kb on + strand, within Ga0059261_1162at 1190.047 kb on + strand, within Ga0059261_1162at 1190.047 kb on + strand, within Ga0059261_1162at 1190.047 kb on + strand, within Ga0059261_1162at 1190.048 kb on - strand, within Ga0059261_1162at 1190.048 kb on - strand, within Ga0059261_1162at 1190.048 kb on - strand, within Ga0059261_1162at 1190.048 kb on - strand, within Ga0059261_1162at 1190.313 kb on - strand, within Ga0059261_1162at 1190.727 kb on - strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.854 kb on + strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strandat 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1190.855 kb on - strand, within Ga0059261_1162at 1191.052 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.157 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.471 kb on - strand, within Ga0059261_1162at 1191.471 kb on - strand, within Ga0059261_1162at 1191.471 kb on - strand, within Ga0059261_1162at 1191.499 kb on + strand, within Ga0059261_1162at 1191.499 kb on + strand, within Ga0059261_1162at 1191.704 kb on - strandat 1192.042 kb on + strandat 1192.043 kb on - strandat 1192.043 kb on - strandat 1192.043 kb on - strandat 1192.043 kb on - strandat 1192.199 kb on - strand, within Ga0059261_1163at 1192.199 kb on - strand, within Ga0059261_1163at 1192.274 kb on + strand, within Ga0059261_1163at 1192.274 kb on + strand, within Ga0059261_1163at 1192.274 kb on + strand, within Ga0059261_1163at 1192.275 kb on - strandat 1192.275 kb on - strandat 1192.287 kb on - strandat 1192.360 kb on - strandat 1192.411 kb on + strandat 1192.412 kb on - strandat 1192.412 kb on - strandat 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strandat 1192.578 kb on - strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.770 kb on - strand, within Ga0059261_1164at 1192.770 kb on - strand, within Ga0059261_1164at 1192.823 kb on + strand, within Ga0059261_1164at 1192.824 kb on - strand, within Ga0059261_1164at 1192.824 kb on - strand, within Ga0059261_1164at 1192.824 kb on - strand, within Ga0059261_1164at 1192.875 kb on + strand, within Ga0059261_1164at 1192.875 kb on + strand, within Ga0059261_1164at 1192.875 kb on + strand, within Ga0059261_1164at 1192.876 kb on - strand, within Ga0059261_1164at 1192.876 kb on - strand, within Ga0059261_1164at 1192.876 kb on - strandat 1192.876 kb on - strand, within Ga0059261_1164at 1192.900 kb on - strand, within Ga0059261_1164at 1192.925 kb on + strand, within Ga0059261_1164at 1192.925 kb on + strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strandat 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,188,574 + Ga0059261_1160 0.27 -0.5
1,188,574 + Ga0059261_1160 0.27 -0.3
1,188,619 + Ga0059261_1160 0.37 -0.2
1,188,619 + Ga0059261_1160 0.37 -0.2
1,188,619 + Ga0059261_1160 0.37 -0.7
1,188,620 - Ga0059261_1160 0.37 -0.4
1,188,620 - Ga0059261_1160 0.37 -0.2
1,188,620 - Ga0059261_1160 0.37 -0.4
1,188,620 - Ga0059261_1160 0.37 +0.5
1,188,620 - Ga0059261_1160 0.37 -0.5
1,188,620 - Ga0059261_1160 0.37 -0.1
1,188,620 - Ga0059261_1160 0.37 +0.0
1,188,621 + Ga0059261_1160 0.38 -0.6
1,188,621 + Ga0059261_1160 0.38 -0.1
1,188,621 + Ga0059261_1160 0.38 -0.6
1,188,621 + +0.8
1,188,621 + Ga0059261_1160 0.38 -0.2
1,188,622 - Ga0059261_1160 0.38 -0.2
1,188,622 - Ga0059261_1160 0.38 -0.1
1,188,622 - Ga0059261_1160 0.38 +0.7
1,188,622 - Ga0059261_1160 0.38 -0.2
1,188,622 - Ga0059261_1160 0.38 -0.1
1,188,622 - Ga0059261_1160 0.38 +0.4
1,188,622 - Ga0059261_1160 0.38 +0.2
1,188,772 + +0.9
1,188,772 + Ga0059261_1160 0.72 -0.1
1,188,772 + Ga0059261_1160 0.72 +0.1
1,188,773 - Ga0059261_1160 0.72 -0.0
1,188,773 - Ga0059261_1160 0.72 +0.0
1,188,773 - Ga0059261_1160 0.72 -0.0
1,188,774 + Ga0059261_1160 0.72 -0.2
1,188,774 + Ga0059261_1160 0.72 +0.1
1,188,774 + Ga0059261_1160 0.72 +0.2
1,188,775 - Ga0059261_1160 0.72 -0.5
1,188,775 - Ga0059261_1160 0.72 -0.2
1,188,775 - Ga0059261_1160 0.72 -0.5
1,188,775 - Ga0059261_1160 0.72 -0.4
1,189,129 - Ga0059261_1161 0.43 +0.6
1,189,299 - Ga0059261_1161 0.77 +0.3
1,189,299 - Ga0059261_1161 0.77 +0.7
1,189,299 - Ga0059261_1161 0.77 +0.6
1,189,299 - Ga0059261_1161 0.77 -0.0
1,189,299 - Ga0059261_1161 0.77 +0.1
1,189,299 - Ga0059261_1161 0.77 -0.1
1,189,307 + Ga0059261_1161 0.79 +0.1
1,189,355 + Ga0059261_1161 0.88 -0.3
1,189,355 + Ga0059261_1161 0.88 +0.1
1,189,355 + Ga0059261_1161 0.88 +0.9
1,189,356 - Ga0059261_1161 0.88 +0.3
1,189,356 - Ga0059261_1161 0.88 +0.1
1,189,356 - Ga0059261_1161 0.88 +0.1
1,189,358 + Ga0059261_1161 0.89 -0.1
1,189,359 - Ga0059261_1161 0.89 +0.3
1,189,393 - -0.1
1,189,393 - +0.2
1,189,597 + +0.4
1,189,597 + -0.7
1,189,598 - +0.5
1,189,598 - -0.0
1,189,627 - -0.4
1,189,728 - Ga0059261_1162 0.13 -0.0
1,190,047 + Ga0059261_1162 0.25 -0.1
1,190,047 + Ga0059261_1162 0.25 -0.4
1,190,047 + Ga0059261_1162 0.25 +0.3
1,190,047 + Ga0059261_1162 0.25 +0.1
1,190,048 - Ga0059261_1162 0.25 -0.1
1,190,048 - Ga0059261_1162 0.25 -0.1
1,190,048 - Ga0059261_1162 0.25 -0.4
1,190,048 - Ga0059261_1162 0.25 -0.4
1,190,313 - Ga0059261_1162 0.36 -1.0
1,190,727 - Ga0059261_1162 0.52 +1.2
1,190,854 + Ga0059261_1162 0.57 +0.9
1,190,854 + Ga0059261_1162 0.57 +0.3
1,190,854 + Ga0059261_1162 0.57 -0.0
1,190,854 + Ga0059261_1162 0.57 +0.5
1,190,854 + Ga0059261_1162 0.57 -0.3
1,190,854 + Ga0059261_1162 0.57 -0.1
1,190,854 + Ga0059261_1162 0.57 -0.1
1,190,854 + Ga0059261_1162 0.57 -0.2
1,190,854 + Ga0059261_1162 0.57 +0.4
1,190,854 + Ga0059261_1162 0.57 +0.2
1,190,855 - Ga0059261_1162 0.57 +0.0
1,190,855 - +1.2
1,190,855 - Ga0059261_1162 0.57 +0.4
1,190,855 - Ga0059261_1162 0.57 -0.6
1,190,855 - Ga0059261_1162 0.57 -0.1
1,190,855 - Ga0059261_1162 0.57 +0.7
1,190,855 - Ga0059261_1162 0.57 +0.2
1,190,855 - Ga0059261_1162 0.57 +0.7
1,190,855 - Ga0059261_1162 0.57 +0.0
1,190,855 - Ga0059261_1162 0.57 +0.4
1,190,855 - Ga0059261_1162 0.57 -0.4
1,190,855 - Ga0059261_1162 0.57 +0.8
1,190,855 - Ga0059261_1162 0.57 -1.1
1,191,052 + Ga0059261_1162 0.65 +0.4
1,191,097 + Ga0059261_1162 0.67 +0.5
1,191,097 + Ga0059261_1162 0.67 -0.3
1,191,097 + Ga0059261_1162 0.67 +0.1
1,191,097 + Ga0059261_1162 0.67 -0.1
1,191,097 + Ga0059261_1162 0.67 +0.1
1,191,097 + Ga0059261_1162 0.67 +0.2
1,191,098 - Ga0059261_1162 0.67 -0.1
1,191,098 - Ga0059261_1162 0.67 -0.6
1,191,098 - Ga0059261_1162 0.67 +0.2
1,191,098 - Ga0059261_1162 0.67 -0.0
1,191,098 - Ga0059261_1162 0.67 +0.3
1,191,098 - Ga0059261_1162 0.67 +0.2
1,191,098 - Ga0059261_1162 0.67 +0.4
1,191,098 - Ga0059261_1162 0.67 +0.2
1,191,098 - Ga0059261_1162 0.67 +0.3
1,191,100 + Ga0059261_1162 0.67 +0.5
1,191,100 + Ga0059261_1162 0.67 +0.4
1,191,100 + Ga0059261_1162 0.67 +0.2
1,191,100 + Ga0059261_1162 0.67 +0.1
1,191,100 + Ga0059261_1162 0.67 +0.6
1,191,100 + Ga0059261_1162 0.67 -0.5
1,191,101 - Ga0059261_1162 0.67 -0.0
1,191,101 - Ga0059261_1162 0.67 -0.8
1,191,101 - Ga0059261_1162 0.67 +0.0
1,191,101 - Ga0059261_1162 0.67 -0.0
1,191,101 - Ga0059261_1162 0.67 +0.3
1,191,101 - Ga0059261_1162 0.67 -0.2
1,191,157 + Ga0059261_1162 0.69 +1.2
1,191,470 + Ga0059261_1162 0.81 -0.0
1,191,470 + Ga0059261_1162 0.81 +0.6
1,191,470 + Ga0059261_1162 0.81 +0.5
1,191,470 + Ga0059261_1162 0.81 -0.6
1,191,471 - Ga0059261_1162 0.81 +0.6
1,191,471 - Ga0059261_1162 0.81 -0.4
1,191,471 - Ga0059261_1162 0.81 +0.7
1,191,499 + Ga0059261_1162 0.82 -0.2
1,191,499 + Ga0059261_1162 0.82 +0.4
1,191,704 - -0.6
1,192,042 + +0.1
1,192,043 - -0.1
1,192,043 - -0.6
1,192,043 - +0.6
1,192,043 - +0.4
1,192,199 - Ga0059261_1163 0.52 -1.8
1,192,199 - Ga0059261_1163 0.52 -0.1
1,192,274 + Ga0059261_1163 0.89 -0.3
1,192,274 + Ga0059261_1163 0.89 -0.3
1,192,274 + Ga0059261_1163 0.89 -0.4
1,192,275 - +0.0
1,192,275 - -0.1
1,192,287 - +0.4
1,192,360 - -1.4
1,192,411 + +0.4
1,192,412 - +0.2
1,192,412 - +0.1
1,192,577 + Ga0059261_1164 0.14 +0.2
1,192,577 + Ga0059261_1164 0.14 +0.1
1,192,577 + Ga0059261_1164 0.14 -0.0
1,192,577 + Ga0059261_1164 0.14 -0.5
1,192,577 + Ga0059261_1164 0.14 -0.3
1,192,578 - Ga0059261_1164 0.15 +0.2
1,192,578 - Ga0059261_1164 0.15 +0.2
1,192,578 - Ga0059261_1164 0.15 +1.6
1,192,578 - Ga0059261_1164 0.15 -0.8
1,192,578 - Ga0059261_1164 0.15 -0.1
1,192,578 - Ga0059261_1164 0.15 +0.1
1,192,578 - Ga0059261_1164 0.15 +0.4
1,192,578 - Ga0059261_1164 0.15 -0.2
1,192,578 - Ga0059261_1164 0.15 -1.5
1,192,578 - -0.4
1,192,578 - Ga0059261_1164 0.15 -0.0
1,192,769 + Ga0059261_1164 0.30 +0.3
1,192,769 + Ga0059261_1164 0.30 +0.7
1,192,769 + Ga0059261_1164 0.30 -0.0
1,192,769 + Ga0059261_1164 0.30 -0.4
1,192,770 - Ga0059261_1164 0.30 +0.1
1,192,770 - Ga0059261_1164 0.30 -0.2
1,192,823 + Ga0059261_1164 0.34 +0.5
1,192,824 - Ga0059261_1164 0.35 +0.2
1,192,824 - Ga0059261_1164 0.35 -1.4
1,192,824 - Ga0059261_1164 0.35 +0.1
1,192,875 + Ga0059261_1164 0.39 -0.2
1,192,875 + Ga0059261_1164 0.39 -0.2
1,192,875 + Ga0059261_1164 0.39 -0.1
1,192,876 - Ga0059261_1164 0.39 -0.3
1,192,876 - Ga0059261_1164 0.39 -0.4
1,192,876 - +1.2
1,192,876 - Ga0059261_1164 0.39 -0.3
1,192,900 - Ga0059261_1164 0.41 +1.0
1,192,925 + Ga0059261_1164 0.43 -1.2
1,192,925 + Ga0059261_1164 0.43 -0.1
1,192,926 - Ga0059261_1164 0.43 +0.9
1,192,926 - Ga0059261_1164 0.43 -0.5
1,192,926 - -1.1
1,192,926 - Ga0059261_1164 0.43 -0.5
1,192,926 - Ga0059261_1164 0.43 +0.1
1,192,926 - Ga0059261_1164 0.43 +0.1
1,192,926 - Ga0059261_1164 0.43 +0.5
1,192,926 - Ga0059261_1164 0.43 +0.6

Or see this region's nucleotide sequence