Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0935

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0933 and Ga0059261_0934 are separated by 70 nucleotidesGa0059261_0934 and Ga0059261_0935 are separated by 151 nucleotidesGa0059261_0935 and Ga0059261_0936 are separated by 46 nucleotidesGa0059261_0936 and Ga0059261_0937 are separated by 35 nucleotides Ga0059261_0933: Ga0059261_0933 - Molybdopterin biosynthesis enzyme, at 964,237 to 965,421 _0933 Ga0059261_0934: Ga0059261_0934 - SOS regulatory protein LexA, at 965,492 to 966,178 _0934 Ga0059261_0935: Ga0059261_0935 - Uncharacterized conserved protein, at 966,330 to 966,737 _0935 Ga0059261_0936: Ga0059261_0936 - phenazine biosynthesis protein PhzF family, at 966,784 to 967,671 _0936 Ga0059261_0937: Ga0059261_0937 - Predicted transcriptional regulators, at 967,707 to 968,036 _0937 Position (kb) 966 967Strain fitness (log2 ratio) -2 -1 0 1at 965.440 kb on + strandat 965.970 kb on - strand, within Ga0059261_0934at 966.053 kb on + strand, within Ga0059261_0934at 966.174 kb on - strandat 966.214 kb on + strandat 966.215 kb on - strandat 966.258 kb on + strandat 966.259 kb on - strandat 966.294 kb on + strandat 966.294 kb on + strandat 966.372 kb on + strand, within Ga0059261_0935at 966.373 kb on - strand, within Ga0059261_0935at 966.373 kb on - strand, within Ga0059261_0935at 966.416 kb on + strand, within Ga0059261_0935at 966.416 kb on + strand, within Ga0059261_0935at 966.416 kb on + strandat 966.417 kb on - strand, within Ga0059261_0935at 966.417 kb on - strand, within Ga0059261_0935at 966.510 kb on + strand, within Ga0059261_0935at 966.510 kb on + strandat 966.510 kb on + strand, within Ga0059261_0935at 966.510 kb on + strand, within Ga0059261_0935at 966.511 kb on - strand, within Ga0059261_0935at 966.511 kb on - strand, within Ga0059261_0935at 966.934 kb on - strand, within Ga0059261_0936at 966.934 kb on - strand, within Ga0059261_0936at 967.058 kb on + strand, within Ga0059261_0936at 967.058 kb on + strand, within Ga0059261_0936at 967.058 kb on + strand, within Ga0059261_0936at 967.059 kb on - strand, within Ga0059261_0936at 967.059 kb on - strand, within Ga0059261_0936at 967.059 kb on - strand, within Ga0059261_0936at 967.059 kb on - strand, within Ga0059261_0936at 967.059 kb on - strand, within Ga0059261_0936at 967.175 kb on + strand, within Ga0059261_0936at 967.175 kb on + strand, within Ga0059261_0936at 967.175 kb on + strand, within Ga0059261_0936at 967.175 kb on + strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.176 kb on - strand, within Ga0059261_0936at 967.219 kb on + strand, within Ga0059261_0936at 967.479 kb on + strand, within Ga0059261_0936at 967.479 kb on + strand, within Ga0059261_0936at 967.479 kb on + strand, within Ga0059261_0936at 967.479 kb on + strand, within Ga0059261_0936at 967.479 kb on + strandat 967.479 kb on + strand, within Ga0059261_0936at 967.495 kb on - strand, within Ga0059261_0936at 967.711 kb on - strandat 967.734 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
965,440 + -0.5
965,970 - Ga0059261_0934 0.70 -1.2
966,053 + Ga0059261_0934 0.82 -2.0
966,174 - +0.2
966,214 + +0.7
966,215 - -0.3
966,258 + -0.1
966,259 - +0.1
966,294 + -0.2
966,294 + -0.2
966,372 + Ga0059261_0935 0.10 -0.2
966,373 - Ga0059261_0935 0.11 +0.5
966,373 - Ga0059261_0935 0.11 -0.4
966,416 + Ga0059261_0935 0.21 +0.4
966,416 + Ga0059261_0935 0.21 -0.2
966,416 + -0.4
966,417 - Ga0059261_0935 0.21 -1.2
966,417 - Ga0059261_0935 0.21 -0.8
966,510 + Ga0059261_0935 0.44 -0.2
966,510 + -0.8
966,510 + Ga0059261_0935 0.44 -0.2
966,510 + Ga0059261_0935 0.44 +0.2
966,511 - Ga0059261_0935 0.44 -0.1
966,511 - Ga0059261_0935 0.44 -0.1
966,934 - Ga0059261_0936 0.17 -0.1
966,934 - Ga0059261_0936 0.17 +0.1
967,058 + Ga0059261_0936 0.31 +0.8
967,058 + Ga0059261_0936 0.31 -0.4
967,058 + Ga0059261_0936 0.31 +0.1
967,059 - Ga0059261_0936 0.31 -0.4
967,059 - Ga0059261_0936 0.31 +0.7
967,059 - Ga0059261_0936 0.31 -0.4
967,059 - Ga0059261_0936 0.31 +0.8
967,059 - Ga0059261_0936 0.31 +0.7
967,175 + Ga0059261_0936 0.44 +0.6
967,175 + Ga0059261_0936 0.44 +0.0
967,175 + Ga0059261_0936 0.44 +0.4
967,175 + Ga0059261_0936 0.44 -0.2
967,176 - Ga0059261_0936 0.44 +0.4
967,176 - Ga0059261_0936 0.44 -1.8
967,176 - Ga0059261_0936 0.44 +0.5
967,176 - Ga0059261_0936 0.44 -0.2
967,176 - Ga0059261_0936 0.44 +0.0
967,176 - Ga0059261_0936 0.44 +0.7
967,176 - Ga0059261_0936 0.44 -0.4
967,176 - Ga0059261_0936 0.44 +1.1
967,176 - Ga0059261_0936 0.44 -0.6
967,176 - Ga0059261_0936 0.44 -0.9
967,219 + Ga0059261_0936 0.49 -0.4
967,479 + Ga0059261_0936 0.78 -0.5
967,479 + Ga0059261_0936 0.78 +0.5
967,479 + Ga0059261_0936 0.78 -0.1
967,479 + Ga0059261_0936 0.78 -0.7
967,479 + +0.9
967,479 + Ga0059261_0936 0.78 -0.0
967,495 - Ga0059261_0936 0.80 -0.3
967,711 - +0.6
967,734 + -0.0

Or see this region's nucleotide sequence