Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35970 and BPHYT_RS35975 are separated by 66 nucleotides BPHYT_RS35975 and BPHYT_RS35980 are separated by 165 nucleotides BPHYT_RS35980 and BPHYT_RS35985 are separated by 100 nucleotides
BPHYT_RS35970: BPHYT_RS35970 - DNA recombinase, at 27,468 to 28,574
_RS35970
BPHYT_RS35975: BPHYT_RS35975 - Xre family transcriptional regulator, at 28,641 to 28,880
_RS35975
BPHYT_RS35980: BPHYT_RS35980 - hypothetical protein, at 29,046 to 30,128
_RS35980
BPHYT_RS35985: BPHYT_RS35985 - hypothetical protein, at 30,229 to 30,975
_RS35985
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1 at 28.316 kb on + strand, within BPHYT_RS35970 at 28.418 kb on + strand, within BPHYT_RS35970 at 28.441 kb on - strand, within BPHYT_RS35970 at 28.441 kb on - strand, within BPHYT_RS35970 at 28.446 kb on - strand, within BPHYT_RS35970 at 28.553 kb on - strand at 28.579 kb on - strand at 28.770 kb on - strand, within BPHYT_RS35975 at 28.771 kb on + strand, within BPHYT_RS35975 at 28.771 kb on + strand, within BPHYT_RS35975 at 28.771 kb on + strand, within BPHYT_RS35975 at 28.771 kb on + strand, within BPHYT_RS35975 at 28.771 kb on + strand, within BPHYT_RS35975 at 28.772 kb on - strand, within BPHYT_RS35975 at 28.772 kb on - strand, within BPHYT_RS35975 at 28.772 kb on - strand, within BPHYT_RS35975 at 28.827 kb on - strand, within BPHYT_RS35975 at 28.834 kb on - strand, within BPHYT_RS35975 at 28.891 kb on + strand at 28.892 kb on - strand at 28.895 kb on + strand at 28.927 kb on - strand at 28.927 kb on - strand at 28.942 kb on - strand at 28.957 kb on + strand at 28.957 kb on + strand at 29.045 kb on - strand at 29.111 kb on + strand at 29.111 kb on + strand at 29.111 kb on + strand at 29.112 kb on - strand at 29.112 kb on - strand at 29.112 kb on - strand at 29.114 kb on - strand at 29.114 kb on - strand at 29.513 kb on - strand, within BPHYT_RS35980 at 29.599 kb on + strand, within BPHYT_RS35980 at 29.600 kb on - strand, within BPHYT_RS35980 at 29.656 kb on + strand, within BPHYT_RS35980 at 29.656 kb on + strand, within BPHYT_RS35980 at 29.657 kb on - strand, within BPHYT_RS35980 at 29.657 kb on - strand, within BPHYT_RS35980 at 29.673 kb on - strand, within BPHYT_RS35980 at 30.794 kb on + strand, within BPHYT_RS35985 at 30.795 kb on - strand, within BPHYT_RS35985 at 30.803 kb on + strand, within BPHYT_RS35985 at 30.803 kb on + strand, within BPHYT_RS35985 at 31.108 kb on + strand at 31.108 kb on + strand at 31.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 28,316 + BPHYT_RS35970 0.77 -0.1 28,418 + BPHYT_RS35970 0.86 -0.6 28,441 - BPHYT_RS35970 0.88 +0.1 28,441 - BPHYT_RS35970 0.88 -0.6 28,446 - BPHYT_RS35970 0.88 +0.6 28,553 - +0.2 28,579 - +0.3 28,770 - BPHYT_RS35975 0.54 -1.5 28,771 + BPHYT_RS35975 0.54 +0.1 28,771 + BPHYT_RS35975 0.54 +0.1 28,771 + BPHYT_RS35975 0.54 -1.3 28,771 + BPHYT_RS35975 0.54 +0.9 28,771 + BPHYT_RS35975 0.54 +0.3 28,772 - BPHYT_RS35975 0.55 -0.3 28,772 - BPHYT_RS35975 0.55 -1.0 28,772 - BPHYT_RS35975 0.55 -0.2 28,827 - BPHYT_RS35975 0.78 +0.4 28,834 - BPHYT_RS35975 0.80 +0.1 28,891 + -1.6 28,892 - -0.3 28,895 + -0.0 28,927 - +0.0 28,927 - -0.9 28,942 - -0.0 28,957 + +0.2 28,957 + +0.3 29,045 - +0.1 29,111 + -0.6 29,111 + -0.1 29,111 + +0.8 29,112 - +0.1 29,112 - +0.8 29,112 - -0.2 29,114 - +1.1 29,114 - -0.1 29,513 - BPHYT_RS35980 0.43 +0.0 29,599 + BPHYT_RS35980 0.51 -0.4 29,600 - BPHYT_RS35980 0.51 +0.2 29,656 + BPHYT_RS35980 0.56 -1.7 29,656 + BPHYT_RS35980 0.56 -0.3 29,657 - BPHYT_RS35980 0.56 +0.3 29,657 - BPHYT_RS35980 0.56 +0.2 29,673 - BPHYT_RS35980 0.58 -0.5 30,794 + BPHYT_RS35985 0.76 +0.3 30,795 - BPHYT_RS35985 0.76 +0.1 30,803 + BPHYT_RS35985 0.77 +0.2 30,803 + BPHYT_RS35985 0.77 -0.2 31,108 + +0.0 31,108 + +0.6 31,109 - +1.6
Or see this region's nucleotide sequence