Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS32855 and BPHYT_RS32860 are separated by 0 nucleotides BPHYT_RS32860 and BPHYT_RS32865 are separated by 307 nucleotides BPHYT_RS32865 and BPHYT_RS32870 are separated by 207 nucleotides BPHYT_RS32870 and BPHYT_RS32875 are separated by 206 nucleotides
BPHYT_RS32855: BPHYT_RS32855 - TetR family transcriptional regulator, at 2,951,980 to 2,952,474
_RS32855
BPHYT_RS32860: BPHYT_RS32860 - hypothetical protein, at 2,952,475 to 2,952,702
_RS32860
BPHYT_RS32865: BPHYT_RS32865 - choloylglycine hydrolase, at 2,953,010 to 2,954,089
_RS32865
BPHYT_RS32870: BPHYT_RS32870 - hypothetical protein, at 2,954,297 to 2,954,743
_RS32870
BPHYT_RS32875: BPHYT_RS32875 - GCN5 family acetyltransferase, at 2,954,950 to 2,955,762
_RS32875
Position (kb)
2953
2954
2955 Strain fitness (log2 ratio)
-1
0
1 at 2952.635 kb on - strand, within BPHYT_RS32860 at 2952.889 kb on - strand at 2952.999 kb on - strand at 2953.104 kb on + strand at 2953.107 kb on - strand at 2953.731 kb on - strand, within BPHYT_RS32865 at 2953.734 kb on + strand, within BPHYT_RS32865 at 2953.823 kb on - strand, within BPHYT_RS32865 at 2954.006 kb on - strand at 2954.414 kb on + strand, within BPHYT_RS32870 at 2954.524 kb on - strand, within BPHYT_RS32870 at 2954.660 kb on + strand, within BPHYT_RS32870 at 2954.773 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 2,952,635 - BPHYT_RS32860 0.70 +0.3 2,952,889 - -0.1 2,952,999 - -1.6 2,953,104 + +0.5 2,953,107 - +0.9 2,953,731 - BPHYT_RS32865 0.67 -0.2 2,953,734 + BPHYT_RS32865 0.67 -0.2 2,953,823 - BPHYT_RS32865 0.75 -0.2 2,954,006 - +0.1 2,954,414 + BPHYT_RS32870 0.26 +0.3 2,954,524 - BPHYT_RS32870 0.51 +0.2 2,954,660 + BPHYT_RS32870 0.81 +0.5 2,954,773 + -0.1
Or see this region's nucleotide sequence