Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31050

Experiment: casaminos

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31045 and BPHYT_RS31050 are separated by 147 nucleotidesBPHYT_RS31050 and BPHYT_RS31055 are separated by 30 nucleotidesBPHYT_RS31055 and BPHYT_RS31060 are separated by 47 nucleotides BPHYT_RS31045: BPHYT_RS31045 - UDP- phosphate galactosephosphotransferase, at 2,519,958 to 2,521,310 _RS31045 BPHYT_RS31050: BPHYT_RS31050 - epimerase, at 2,521,458 to 2,522,597 _RS31050 BPHYT_RS31055: BPHYT_RS31055 - glycosyl transferase, at 2,522,628 to 2,523,494 _RS31055 BPHYT_RS31060: BPHYT_RS31060 - capsular polysaccharide biosynthesis protein, at 2,523,542 to 2,524,822 _RS31060 Position (kb) 2521 2522 2523Strain fitness (log2 ratio) -1 0 1at 2520.971 kb on - strand, within BPHYT_RS31045at 2521.538 kb on + strandat 2522.241 kb on + strandat 2522.308 kb on - strand, within BPHYT_RS31050at 2522.595 kb on + strandat 2523.259 kb on - strand, within BPHYT_RS31055at 2523.573 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
remove
2,520,971 - BPHYT_RS31045 0.75 -0.0
2,521,538 + -0.0
2,522,241 + +0.9
2,522,308 - BPHYT_RS31050 0.75 -0.7
2,522,595 + +0.3
2,523,259 - BPHYT_RS31055 0.73 -0.0
2,523,573 - +0.0

Or see this region's nucleotide sequence