Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30415

Experiment: casaminos

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS30410 and BPHYT_RS30415 are separated by 545 nucleotidesBPHYT_RS30415 and BPHYT_RS30420 are separated by 280 nucleotides BPHYT_RS30410: BPHYT_RS30410 - chloroperoxidase, at 2,379,035 to 2,379,856 _RS30410 BPHYT_RS30415: BPHYT_RS30415 - AraC family transcriptional regulator, at 2,380,402 to 2,381,319 _RS30415 BPHYT_RS30420: BPHYT_RS30420 - transcriptional regulator, at 2,381,600 to 2,384,536 _RS30420 Position (kb) 2380 2381 2382Strain fitness (log2 ratio) -2 -1 0 1at 2379.501 kb on - strand, within BPHYT_RS30410at 2379.615 kb on - strand, within BPHYT_RS30410at 2379.907 kb on - strandat 2380.916 kb on + strand, within BPHYT_RS30415at 2381.099 kb on - strand, within BPHYT_RS30415at 2381.201 kb on - strand, within BPHYT_RS30415at 2381.393 kb on + strandat 2381.393 kb on + strandat 2381.610 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
remove
2,379,501 - BPHYT_RS30410 0.57 -0.0
2,379,615 - BPHYT_RS30410 0.71 -0.0
2,379,907 - +1.5
2,380,916 + BPHYT_RS30415 0.56 -0.7
2,381,099 - BPHYT_RS30415 0.76 -1.9
2,381,201 - BPHYT_RS30415 0.87 -0.4
2,381,393 + -0.7
2,381,393 + +0.5
2,381,610 + -0.1

Or see this region's nucleotide sequence