Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21810 and BPHYT_RS21815 are separated by 69 nucleotides BPHYT_RS21815 and BPHYT_RS21820 are separated by 290 nucleotides BPHYT_RS21820 and BPHYT_RS21825 are separated by 384 nucleotides
BPHYT_RS21810: BPHYT_RS21810 - histidine kinase, at 448,770 to 450,215
_RS21810
BPHYT_RS21815: BPHYT_RS21815 - hypothetical protein, at 450,285 to 450,557
_RS21815
BPHYT_RS21820: BPHYT_RS21820 - hypothetical protein, at 450,848 to 451,132
_RS21820
BPHYT_RS21825: BPHYT_RS21825 - chemotaxis protein CheY, at 451,517 to 451,903
_RS21825
Position (kb) 450
451 Strain fitness (log2 ratio) -1
0
1 at 449.319 kb on + strand, within BPHYT_RS21810 at 449.320 kb on - strand, within BPHYT_RS21810 at 449.989 kb on + strand, within BPHYT_RS21810 at 449.989 kb on + strand, within BPHYT_RS21810 at 449.990 kb on - strand, within BPHYT_RS21810 at 450.358 kb on - strand, within BPHYT_RS21815 at 450.860 kb on - strand at 451.143 kb on - strand at 451.192 kb on + strand at 451.403 kb on + strand at 451.536 kb on + strand at 451.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 449,319 + BPHYT_RS21810 0.38 +0.9 449,320 - BPHYT_RS21810 0.38 -0.9 449,989 + BPHYT_RS21810 0.84 +0.4 449,989 + BPHYT_RS21810 0.84 -0.8 449,990 - BPHYT_RS21810 0.84 -0.9 450,358 - BPHYT_RS21815 0.27 -1.7 450,860 - -0.1 451,143 - +0.1 451,192 + -0.4 451,403 + +0.4 451,536 + -0.3 451,537 - +0.1
Or see this region's nucleotide sequence