Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17905

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17895 and BPHYT_RS17900 overlap by 4 nucleotidesBPHYT_RS17900 and BPHYT_RS17905 overlap by 4 nucleotidesBPHYT_RS17905 and BPHYT_RS17910 overlap by 4 nucleotides BPHYT_RS17895: BPHYT_RS17895 - secretin, at 4,040,407 to 4,042,185 _RS17895 BPHYT_RS17900: BPHYT_RS17900 - hypothetical protein, at 4,042,182 to 4,043,114 _RS17900 BPHYT_RS17905: BPHYT_RS17905 - fimbrial assembly family protein, at 4,043,111 to 4,043,830 _RS17905 BPHYT_RS17910: BPHYT_RS17910 - hypothetical protein, at 4,043,827 to 4,044,819 _RS17910 Position (kb) 4043 4044Strain fitness (log2 ratio) -2 -1 0 1at 4042.114 kb on + strandat 4042.137 kb on + strandat 4042.138 kb on - strandat 4042.158 kb on + strandat 4042.159 kb on - strandat 4042.161 kb on - strandat 4042.587 kb on + strand, within BPHYT_RS17900at 4042.677 kb on - strand, within BPHYT_RS17900at 4042.677 kb on - strand, within BPHYT_RS17900at 4043.108 kb on + strandat 4043.414 kb on + strand, within BPHYT_RS17905at 4043.459 kb on + strand, within BPHYT_RS17905at 4043.459 kb on + strand, within BPHYT_RS17905at 4043.466 kb on - strand, within BPHYT_RS17905at 4043.959 kb on + strand, within BPHYT_RS17910at 4043.960 kb on - strand, within BPHYT_RS17910at 4044.144 kb on - strand, within BPHYT_RS17910at 4044.144 kb on - strand, within BPHYT_RS17910at 4044.176 kb on + strand, within BPHYT_RS17910at 4044.176 kb on + strand, within BPHYT_RS17910at 4044.176 kb on + strand, within BPHYT_RS17910at 4044.176 kb on + strand, within BPHYT_RS17910at 4044.176 kb on + strand, within BPHYT_RS17910at 4044.176 kb on + strand, within BPHYT_RS17910at 4044.177 kb on - strand, within BPHYT_RS17910at 4044.177 kb on - strand, within BPHYT_RS17910at 4044.350 kb on + strand, within BPHYT_RS17910at 4044.351 kb on - strand, within BPHYT_RS17910at 4044.351 kb on - strand, within BPHYT_RS17910at 4044.351 kb on - strand, within BPHYT_RS17910at 4044.365 kb on + strand, within BPHYT_RS17910

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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4,042,114 + -0.1
4,042,137 + +0.2
4,042,138 - +0.6
4,042,158 + +0.4
4,042,159 - -0.1
4,042,161 - +0.1
4,042,587 + BPHYT_RS17900 0.43 -0.0
4,042,677 - BPHYT_RS17900 0.53 -0.8
4,042,677 - BPHYT_RS17900 0.53 +0.4
4,043,108 + -0.4
4,043,414 + BPHYT_RS17905 0.42 -1.4
4,043,459 + BPHYT_RS17905 0.48 -1.8
4,043,459 + BPHYT_RS17905 0.48 -0.4
4,043,466 - BPHYT_RS17905 0.49 -0.4
4,043,959 + BPHYT_RS17910 0.13 -0.6
4,043,960 - BPHYT_RS17910 0.13 -0.3
4,044,144 - BPHYT_RS17910 0.32 -0.1
4,044,144 - BPHYT_RS17910 0.32 -0.3
4,044,176 + BPHYT_RS17910 0.35 +0.8
4,044,176 + BPHYT_RS17910 0.35 -0.5
4,044,176 + BPHYT_RS17910 0.35 +0.3
4,044,176 + BPHYT_RS17910 0.35 -0.6
4,044,176 + BPHYT_RS17910 0.35 -0.0
4,044,176 + BPHYT_RS17910 0.35 -1.4
4,044,177 - BPHYT_RS17910 0.35 +1.1
4,044,177 - BPHYT_RS17910 0.35 -1.4
4,044,350 + BPHYT_RS17910 0.53 -0.4
4,044,351 - BPHYT_RS17910 0.53 -0.5
4,044,351 - BPHYT_RS17910 0.53 -0.1
4,044,351 - BPHYT_RS17910 0.53 +0.5
4,044,365 + BPHYT_RS17910 0.54 -0.4

Or see this region's nucleotide sequence