Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16665

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16660 and BPHYT_RS16665 are separated by 650 nucleotidesBPHYT_RS16665 and BPHYT_RS16670 are separated by 619 nucleotides BPHYT_RS16660: BPHYT_RS16660 - 50S ribosomal protein L13, at 3,772,573 to 3,773,001 _RS16660 BPHYT_RS16665: BPHYT_RS16665 - peroxiredoxin, at 3,773,652 to 3,774,074 _RS16665 BPHYT_RS16670: BPHYT_RS16670 - hypothetical protein, at 3,774,694 to 3,775,521 _RS16670 Position (kb) 3773 3774 3775Strain fitness (log2 ratio) -1 0 1at 3773.192 kb on + strandat 3773.204 kb on + strandat 3773.210 kb on - strandat 3773.210 kb on - strandat 3773.228 kb on - strandat 3773.328 kb on - strandat 3773.564 kb on - strandat 3773.564 kb on - strandat 3773.609 kb on + strandat 3773.609 kb on + strandat 3773.609 kb on + strandat 3773.817 kb on + strand, within BPHYT_RS16665at 3774.004 kb on - strand, within BPHYT_RS16665at 3774.004 kb on - strand, within BPHYT_RS16665at 3774.612 kb on + strandat 3774.893 kb on + strand, within BPHYT_RS16670at 3774.914 kb on - strand, within BPHYT_RS16670

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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3,773,192 + -0.0
3,773,204 + -0.2
3,773,210 - -0.0
3,773,210 - -0.8
3,773,228 - -0.1
3,773,328 - -0.2
3,773,564 - -0.2
3,773,564 - -1.0
3,773,609 + +0.6
3,773,609 + -0.2
3,773,609 + +0.4
3,773,817 + BPHYT_RS16665 0.39 -0.4
3,774,004 - BPHYT_RS16665 0.83 -1.6
3,774,004 - BPHYT_RS16665 0.83 -0.9
3,774,612 + -0.5
3,774,893 + BPHYT_RS16670 0.24 -0.4
3,774,914 - BPHYT_RS16670 0.27 +0.2

Or see this region's nucleotide sequence