Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03520 and BPHYT_RS03525 are separated by 73 nucleotides BPHYT_RS03525 and BPHYT_RS03530 are separated by 19 nucleotides BPHYT_RS03530 and BPHYT_RS03535 are separated by 189 nucleotides BPHYT_RS03535 and BPHYT_RS03540 are separated by 378 nucleotides
BPHYT_RS03520: BPHYT_RS03520 - ATP--cobalamin adenosyltransferase, at 794,604 to 795,158
_RS03520
BPHYT_RS03525: BPHYT_RS03525 - XRE family transcriptional regulator, at 795,232 to 795,564
_RS03525
BPHYT_RS03530: BPHYT_RS03530 - hypothetical protein, at 795,584 to 795,931
_RS03530
BPHYT_RS03535: BPHYT_RS03535 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 796,121 to 797,194
_RS03535
BPHYT_RS03540: BPHYT_RS03540 - peptidase C69, at 797,573 to 799,039
_RS03540
Position (kb) 796
797
798 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 795.156 kb on + strand at 795.175 kb on - strand at 795.579 kb on + strand at 795.696 kb on + strand, within BPHYT_RS03530 at 795.696 kb on + strand, within BPHYT_RS03530 at 795.696 kb on + strand, within BPHYT_RS03530 at 795.697 kb on - strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.723 kb on + strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.724 kb on - strand, within BPHYT_RS03530 at 795.902 kb on + strand at 796.008 kb on + strand at 796.025 kb on + strand at 796.026 kb on - strand at 796.092 kb on + strand at 796.093 kb on - strand at 796.110 kb on + strand at 796.123 kb on - strand at 796.123 kb on - strand at 796.737 kb on + strand, within BPHYT_RS03535 at 796.738 kb on - strand, within BPHYT_RS03535 at 796.912 kb on - strand, within BPHYT_RS03535 at 796.977 kb on + strand, within BPHYT_RS03535 at 797.083 kb on - strand at 797.083 kb on - strand, within BPHYT_RS03535 at 797.083 kb on - strand, within BPHYT_RS03535 at 797.215 kb on + strand at 797.324 kb on - strand at 797.324 kb on - strand at 797.365 kb on + strand at 797.471 kb on + strand at 797.614 kb on + strand at 797.687 kb on - strand at 797.710 kb on - strand at 797.710 kb on - strand at 797.787 kb on + strand, within BPHYT_RS03540 at 797.788 kb on - strand, within BPHYT_RS03540 at 797.788 kb on - strand, within BPHYT_RS03540 at 797.860 kb on - strand, within BPHYT_RS03540 at 797.860 kb on - strand, within BPHYT_RS03540 at 797.860 kb on - strand, within BPHYT_RS03540 at 797.919 kb on + strand, within BPHYT_RS03540 at 797.919 kb on + strand, within BPHYT_RS03540 at 797.920 kb on - strand, within BPHYT_RS03540 at 797.920 kb on - strand, within BPHYT_RS03540 at 797.920 kb on - strand, within BPHYT_RS03540 at 797.955 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.024 kb on + strand, within BPHYT_RS03540 at 798.025 kb on - strand, within BPHYT_RS03540 at 798.025 kb on - strand, within BPHYT_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 795,156 + +0.2 795,175 - +0.0 795,579 + -0.6 795,696 + BPHYT_RS03530 0.32 +0.4 795,696 + BPHYT_RS03530 0.32 +0.5 795,696 + BPHYT_RS03530 0.32 +0.8 795,697 - BPHYT_RS03530 0.32 +0.1 795,723 + BPHYT_RS03530 0.40 +0.4 795,723 + BPHYT_RS03530 0.40 -0.4 795,723 + BPHYT_RS03530 0.40 -1.1 795,724 - BPHYT_RS03530 0.40 -0.2 795,724 - BPHYT_RS03530 0.40 +0.8 795,724 - BPHYT_RS03530 0.40 +0.5 795,724 - BPHYT_RS03530 0.40 +0.3 795,724 - BPHYT_RS03530 0.40 -0.4 795,724 - BPHYT_RS03530 0.40 +2.4 795,902 + +0.7 796,008 + +0.9 796,025 + -0.1 796,026 - -0.5 796,092 + -0.5 796,093 - +0.0 796,110 + -0.8 796,123 - -0.3 796,123 - +0.1 796,737 + BPHYT_RS03535 0.57 -1.8 796,738 - BPHYT_RS03535 0.57 -3.3 796,912 - BPHYT_RS03535 0.74 -1.3 796,977 + BPHYT_RS03535 0.80 -1.3 797,083 - -1.3 797,083 - BPHYT_RS03535 0.90 -5.7 797,083 - BPHYT_RS03535 0.90 -3.9 797,215 + -0.0 797,324 - +0.8 797,324 - -0.8 797,365 + -2.9 797,471 + -6.0 797,614 + -0.4 797,687 - -0.2 797,710 - -0.3 797,710 - +1.4 797,787 + BPHYT_RS03540 0.15 +0.5 797,788 - BPHYT_RS03540 0.15 -0.1 797,788 - BPHYT_RS03540 0.15 +0.5 797,860 - BPHYT_RS03540 0.20 -0.6 797,860 - BPHYT_RS03540 0.20 +0.5 797,860 - BPHYT_RS03540 0.20 +2.2 797,919 + BPHYT_RS03540 0.24 +0.0 797,919 + BPHYT_RS03540 0.24 +0.3 797,920 - BPHYT_RS03540 0.24 +0.1 797,920 - BPHYT_RS03540 0.24 -0.6 797,920 - BPHYT_RS03540 0.24 -0.3 797,955 + BPHYT_RS03540 0.26 -0.0 798,024 + BPHYT_RS03540 0.31 +0.1 798,024 + BPHYT_RS03540 0.31 +0.5 798,024 + BPHYT_RS03540 0.31 -0.8 798,024 + BPHYT_RS03540 0.31 -0.1 798,025 - BPHYT_RS03540 0.31 +0.5 798,025 - BPHYT_RS03540 0.31 +1.4
Or see this region's nucleotide sequence