Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03475 and BPHYT_RS03480 are separated by 398 nucleotides BPHYT_RS03480 and BPHYT_RS03485 are separated by 218 nucleotides
BPHYT_RS03475: BPHYT_RS03475 - catalase, at 783,827 to 785,281
_RS03475
BPHYT_RS03480: BPHYT_RS03480 - ferritin, at 785,680 to 786,177
_RS03480
BPHYT_RS03485: BPHYT_RS03485 - 4-hydroxybenzoate octaprenyltransferase, at 786,396 to 787,259
_RS03485
Position (kb) 785
786
787 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 784.685 kb on + strand, within BPHYT_RS03475 at 784.685 kb on + strand, within BPHYT_RS03475 at 784.686 kb on - strand, within BPHYT_RS03475 at 784.686 kb on - strand at 784.736 kb on + strand, within BPHYT_RS03475 at 784.736 kb on + strand, within BPHYT_RS03475 at 784.736 kb on + strand, within BPHYT_RS03475 at 785.078 kb on + strand, within BPHYT_RS03475 at 785.078 kb on + strand, within BPHYT_RS03475 at 785.078 kb on + strand, within BPHYT_RS03475 at 785.079 kb on - strand, within BPHYT_RS03475 at 785.081 kb on + strand, within BPHYT_RS03475 at 785.081 kb on + strand, within BPHYT_RS03475 at 785.158 kb on + strand at 785.279 kb on + strand at 785.279 kb on + strand at 785.280 kb on - strand at 785.337 kb on + strand at 785.338 kb on - strand at 785.346 kb on + strand at 785.346 kb on + strand at 785.394 kb on - strand at 785.415 kb on + strand at 785.658 kb on - strand at 785.788 kb on + strand, within BPHYT_RS03480 at 785.788 kb on + strand, within BPHYT_RS03480 at 785.788 kb on + strand, within BPHYT_RS03480 at 785.788 kb on + strand, within BPHYT_RS03480 at 785.789 kb on - strand, within BPHYT_RS03480 at 785.789 kb on - strand, within BPHYT_RS03480 at 785.876 kb on - strand, within BPHYT_RS03480 at 786.175 kb on + strand at 786.175 kb on + strand at 786.176 kb on - strand at 786.179 kb on + strand at 786.244 kb on - strand at 786.244 kb on - strand at 786.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 784,685 + BPHYT_RS03475 0.59 -0.2 784,685 + BPHYT_RS03475 0.59 +0.1 784,686 - BPHYT_RS03475 0.59 -2.2 784,686 - -0.0 784,736 + BPHYT_RS03475 0.62 +0.4 784,736 + BPHYT_RS03475 0.62 +0.2 784,736 + BPHYT_RS03475 0.62 +0.0 785,078 + BPHYT_RS03475 0.86 +0.3 785,078 + BPHYT_RS03475 0.86 +0.9 785,078 + BPHYT_RS03475 0.86 +0.1 785,079 - BPHYT_RS03475 0.86 -0.2 785,081 + BPHYT_RS03475 0.86 -0.0 785,081 + BPHYT_RS03475 0.86 -0.2 785,158 + +0.5 785,279 + +0.5 785,279 + -1.1 785,280 - +0.2 785,337 + +0.4 785,338 - -0.8 785,346 + -0.0 785,346 + -0.0 785,394 - +0.2 785,415 + -0.4 785,658 - -3.4 785,788 + BPHYT_RS03480 0.22 -6.8 785,788 + BPHYT_RS03480 0.22 -6.0 785,788 + BPHYT_RS03480 0.22 -3.7 785,788 + BPHYT_RS03480 0.22 -5.1 785,789 - BPHYT_RS03480 0.22 -4.8 785,789 - BPHYT_RS03480 0.22 -4.9 785,876 - BPHYT_RS03480 0.39 -1.5 786,175 + +0.4 786,175 + -0.4 786,176 - -0.3 786,179 + +0.1 786,244 - +1.6 786,244 - -0.3 786,355 - +0.5
Or see this region's nucleotide sequence