Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02595 and BPHYT_RS02600 overlap by 4 nucleotides BPHYT_RS02600 and BPHYT_RS02605 are separated by 145 nucleotides BPHYT_RS02605 and BPHYT_RS02610 are separated by 22 nucleotides BPHYT_RS02610 and BPHYT_RS02615 are separated by 94 nucleotides BPHYT_RS02615 and BPHYT_RS02620 overlap by 28 nucleotides
BPHYT_RS02595: BPHYT_RS02595 - sulfurtransferase, at 589,582 to 590,007
_RS02595
BPHYT_RS02600: BPHYT_RS02600 - glutaredoxin, at 590,004 to 590,267
_RS02600
BPHYT_RS02605: BPHYT_RS02605 - protein-export protein SecB, at 590,413 to 590,883
_RS02605
BPHYT_RS02610: BPHYT_RS02610 - glycerol-3-phosphate dehydrogenase [NAD(P)+], at 590,906 to 591,904
_RS02610
BPHYT_RS02615: BPHYT_RS02615 - Appr-1-p processing protein, at 591,999 to 592,547
_RS02615
BPHYT_RS02620: BPHYT_RS02620 - tRNA methyltransferase, at 592,520 to 592,990
_RS02620
Position (kb) 590
591
592 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.022 kb on + strand at 590.101 kb on + strand, within BPHYT_RS02600 at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.389 kb on + strand at 590.390 kb on - strand at 590.390 kb on - strand at 590.458 kb on + strand at 590.458 kb on + strand at 590.819 kb on - strand, within BPHYT_RS02605 at 590.881 kb on + strand at 590.882 kb on - strand at 591.434 kb on + strand, within BPHYT_RS02610 at 591.435 kb on - strand, within BPHYT_RS02610 at 591.721 kb on + strand, within BPHYT_RS02610 at 591.721 kb on + strand, within BPHYT_RS02610 at 591.722 kb on - strand, within BPHYT_RS02610 at 591.902 kb on + strand at 591.902 kb on + strand at 591.903 kb on - strand at 592.036 kb on + strand at 592.036 kb on + strand at 592.300 kb on - strand, within BPHYT_RS02615 at 592.374 kb on + strand, within BPHYT_RS02615 at 592.403 kb on + strand, within BPHYT_RS02615 at 592.579 kb on + strand, within BPHYT_RS02620 at 592.580 kb on - strand, within BPHYT_RS02620 at 592.830 kb on + strand, within BPHYT_RS02620 at 592.830 kb on + strand, within BPHYT_RS02620 at 592.840 kb on - strand, within BPHYT_RS02620 at 592.840 kb on - strand, within BPHYT_RS02620
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 590,022 + -0.4 590,022 + -0.4 590,022 + +2.0 590,022 + -0.2 590,022 + +0.2 590,101 + BPHYT_RS02600 0.37 -0.6 590,389 + +0.4 590,389 + +0.1 590,389 + -0.3 590,389 + +0.1 590,390 - -1.3 590,390 - -1.3 590,458 + -2.6 590,458 + -1.6 590,819 - BPHYT_RS02605 0.86 -1.8 590,881 + -1.0 590,882 - -2.3 591,434 + BPHYT_RS02610 0.53 -3.2 591,435 - BPHYT_RS02610 0.53 -4.0 591,721 + BPHYT_RS02610 0.82 -3.1 591,721 + BPHYT_RS02610 0.82 -3.3 591,722 - BPHYT_RS02610 0.82 -3.3 591,902 + +1.0 591,902 + -0.3 591,903 - +0.5 592,036 + -0.2 592,036 + -0.2 592,300 - BPHYT_RS02615 0.55 -0.2 592,374 + BPHYT_RS02615 0.68 +0.7 592,403 + BPHYT_RS02615 0.74 -1.2 592,579 + BPHYT_RS02620 0.13 -0.0 592,580 - BPHYT_RS02620 0.13 +0.1 592,830 + BPHYT_RS02620 0.66 +0.0 592,830 + BPHYT_RS02620 0.66 +0.1 592,840 - BPHYT_RS02620 0.68 +0.0 592,840 - BPHYT_RS02620 0.68 -0.3
Or see this region's nucleotide sequence