Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00135 and BPHYT_RS00140 are separated by 49 nucleotides BPHYT_RS00140 and BPHYT_RS00145 are separated by 114 nucleotides BPHYT_RS00145 and BPHYT_RS00150 are separated by 43 nucleotides BPHYT_RS00150 and BPHYT_RS00155 are separated by 302 nucleotides
BPHYT_RS00135: BPHYT_RS00135 - hypothetical protein, at 39,233 to 39,436
_RS00135
BPHYT_RS00140: BPHYT_RS00140 - MerR family transcriptional regulator, at 39,486 to 39,917
_RS00140
BPHYT_RS00145: BPHYT_RS00145 - hypothetical protein, at 40,032 to 40,232
_RS00145
BPHYT_RS00150: BPHYT_RS00150 - DEAD/DEAH box helicase, at 40,276 to 41,679
_RS00150
BPHYT_RS00155: BPHYT_RS00155 - aminotransferase, at 41,982 to 43,136
_RS00155
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1 at 39.455 kb on + strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.456 kb on - strand at 39.543 kb on + strand, within BPHYT_RS00140 at 39.592 kb on - strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.902 kb on + strand at 39.903 kb on - strand at 40.038 kb on - strand at 40.038 kb on - strand at 40.043 kb on + strand at 40.044 kb on - strand at 40.044 kb on - strand at 40.147 kb on - strand, within BPHYT_RS00145 at 40.186 kb on - strand, within BPHYT_RS00145 at 40.244 kb on - strand at 40.276 kb on - strand at 40.276 kb on - strand at 40.308 kb on + strand at 40.853 kb on - strand, within BPHYT_RS00150 at 40.954 kb on + strand, within BPHYT_RS00150 at 40.961 kb on + strand, within BPHYT_RS00150 at 41.287 kb on - strand, within BPHYT_RS00150 at 41.575 kb on + strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.733 kb on - strand at 41.740 kb on - strand at 41.902 kb on - strand at 41.975 kb on + strand at 41.981 kb on + strand at 41.982 kb on - strand at 42.022 kb on + strand at 42.228 kb on + strand, within BPHYT_RS00155 at 42.291 kb on + strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.360 kb on + strand, within BPHYT_RS00155 at 42.361 kb on - strand, within BPHYT_RS00155 at 42.591 kb on + strand, within BPHYT_RS00155
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 39,455 + +0.5 39,455 + +0.2 39,455 + +1.0 39,456 - +0.2 39,543 + BPHYT_RS00140 0.13 +0.4 39,592 - BPHYT_RS00140 0.25 -0.0 39,638 + BPHYT_RS00140 0.35 -0.1 39,638 + BPHYT_RS00140 0.35 +1.4 39,638 + BPHYT_RS00140 0.35 +0.2 39,902 + +0.1 39,903 - -0.3 40,038 - -0.7 40,038 - -0.2 40,043 + -1.7 40,044 - +0.1 40,044 - -0.8 40,147 - BPHYT_RS00145 0.57 +0.7 40,186 - BPHYT_RS00145 0.77 +0.1 40,244 - +0.1 40,276 - -0.1 40,276 - +0.0 40,308 + +0.5 40,853 - BPHYT_RS00150 0.41 -0.9 40,954 + BPHYT_RS00150 0.48 -0.7 40,961 + BPHYT_RS00150 0.49 -0.9 41,287 - BPHYT_RS00150 0.72 -1.5 41,575 + +0.3 41,576 - +0.3 41,576 - +0.2 41,576 - +0.0 41,576 - -1.5 41,733 - +0.8 41,740 - +0.3 41,902 - -0.6 41,975 + +0.3 41,981 + -0.8 41,982 - -0.2 42,022 + -0.2 42,228 + BPHYT_RS00155 0.21 -0.4 42,291 + BPHYT_RS00155 0.27 -0.0 42,337 - BPHYT_RS00155 0.31 -0.0 42,337 - BPHYT_RS00155 0.31 +0.5 42,360 + BPHYT_RS00155 0.33 +0.4 42,361 - BPHYT_RS00155 0.33 -0.3 42,591 + BPHYT_RS00155 0.53 -0.2
Or see this region's nucleotide sequence