Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29430 and AO356_29435 are separated by 23 nucleotides AO356_29435 and AO356_29440 are separated by 478 nucleotides
AO356_29430: AO356_29430 - histidine kinase, at 6,845,418 to 6,849,140
_29430
AO356_29435: AO356_29435 - ABC transporter substrate-binding protein, at 6,849,164 to 6,850,276
_29435
AO356_29440: AO356_29440 - AsnC family transcriptional regulator, at 6,850,755 to 6,851,255
_29440
Position (kb)
6849
6850
6851 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6849.015 kb on + strand at 6849.015 kb on + strand at 6849.016 kb on - strand at 6849.035 kb on - strand at 6849.252 kb on + strand at 6849.584 kb on - strand, within AO356_29435 at 6849.715 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.823 kb on - strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6850.135 kb on + strand, within AO356_29435 at 6850.136 kb on - strand, within AO356_29435 at 6850.551 kb on + strand at 6850.551 kb on + strand at 6850.552 kb on - strand at 6850.565 kb on + strand at 6850.565 kb on + strand at 6850.566 kb on - strand at 6850.566 kb on - strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.580 kb on - strand at 6850.580 kb on - strand at 6850.618 kb on + strand at 6850.619 kb on - strand at 6850.644 kb on + strand at 6850.644 kb on + strand at 6850.854 kb on + strand, within AO356_29440 at 6850.854 kb on + strand, within AO356_29440 at 6850.855 kb on - strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.883 kb on + strand, within AO356_29440 at 6850.884 kb on - strand, within AO356_29440 at 6850.915 kb on + strand, within AO356_29440 at 6851.077 kb on + strand, within AO356_29440
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 6,849,015 + -0.6 6,849,015 + -2.4 6,849,016 - +0.4 6,849,035 - -0.1 6,849,252 + +0.9 6,849,584 - AO356_29435 0.38 +1.0 6,849,715 + AO356_29435 0.50 +0.4 6,849,786 + AO356_29435 0.56 +0.6 6,849,786 + AO356_29435 0.56 -0.9 6,849,786 + AO356_29435 0.56 +0.7 6,849,823 - AO356_29435 0.59 -0.4 6,849,834 + AO356_29435 0.60 +2.1 6,849,834 + AO356_29435 0.60 +0.1 6,849,835 - AO356_29435 0.60 -0.2 6,849,835 - AO356_29435 0.60 +0.5 6,850,135 + AO356_29435 0.87 +0.0 6,850,136 - AO356_29435 0.87 -1.0 6,850,551 + +3.0 6,850,551 + +0.0 6,850,552 - +0.8 6,850,565 + -0.3 6,850,565 + +0.5 6,850,566 - -0.4 6,850,566 - +0.1 6,850,579 + +0.3 6,850,579 + +0.7 6,850,579 + +0.3 6,850,579 + -0.3 6,850,579 + +1.5 6,850,579 + +0.0 6,850,580 - -0.4 6,850,580 - -0.6 6,850,618 + +0.1 6,850,619 - -0.3 6,850,644 + -0.6 6,850,644 + +1.8 6,850,854 + AO356_29440 0.20 +1.1 6,850,854 + AO356_29440 0.20 -0.3 6,850,855 - AO356_29440 0.20 -0.8 6,850,879 + AO356_29440 0.25 +1.5 6,850,879 + AO356_29440 0.25 -0.5 6,850,879 + AO356_29440 0.25 +0.4 6,850,879 + AO356_29440 0.25 +0.5 6,850,880 - AO356_29440 0.25 +0.7 6,850,880 - AO356_29440 0.25 +1.3 6,850,880 - AO356_29440 0.25 +0.3 6,850,880 - AO356_29440 0.25 +1.1 6,850,883 + AO356_29440 0.26 +0.1 6,850,884 - AO356_29440 0.26 +0.4 6,850,915 + AO356_29440 0.32 +0.1 6,851,077 + AO356_29440 0.64 -0.4
Or see this region's nucleotide sequence