Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29430

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29420 and AO356_29425 are separated by 198 nucleotidesAO356_29425 and AO356_29430 are separated by 35 nucleotidesAO356_29430 and AO356_29435 are separated by 23 nucleotides AO356_29420: AO356_29420 - 1-aminocyclopropane-1-carboxylate deaminase, at 6,843,658 to 6,844,674 _29420 AO356_29425: AO356_29425 - AsnC family transcriptional regulator, at 6,844,873 to 6,845,382 _29425 AO356_29430: AO356_29430 - histidine kinase, at 6,845,418 to 6,849,140 _29430 AO356_29435: AO356_29435 - ABC transporter substrate-binding protein, at 6,849,164 to 6,850,276 _29435 Position (kb) 6845 6846 6847 6848 6849 6850Strain fitness (log2 ratio) -2 -1 0 1 2at 6844.506 kb on - strand, within AO356_29420at 6844.656 kb on + strandat 6844.656 kb on + strandat 6844.771 kb on + strandat 6845.415 kb on + strandat 6845.427 kb on - strandat 6845.450 kb on + strandat 6845.450 kb on + strandat 6845.451 kb on - strandat 6845.459 kb on + strandat 6845.591 kb on + strandat 6845.754 kb on + strandat 6845.754 kb on + strandat 6845.895 kb on - strand, within AO356_29430at 6845.911 kb on + strand, within AO356_29430at 6845.911 kb on + strand, within AO356_29430at 6845.912 kb on - strand, within AO356_29430at 6846.337 kb on + strand, within AO356_29430at 6846.338 kb on - strand, within AO356_29430at 6846.412 kb on - strand, within AO356_29430at 6846.563 kb on - strand, within AO356_29430at 6846.563 kb on - strand, within AO356_29430at 6846.590 kb on - strand, within AO356_29430at 6846.590 kb on - strand, within AO356_29430at 6846.743 kb on + strand, within AO356_29430at 6846.743 kb on + strand, within AO356_29430at 6846.744 kb on - strand, within AO356_29430at 6846.744 kb on - strand, within AO356_29430at 6846.934 kb on + strand, within AO356_29430at 6847.470 kb on + strand, within AO356_29430at 6849.015 kb on + strandat 6849.015 kb on + strandat 6849.016 kb on - strandat 6849.035 kb on - strandat 6849.252 kb on + strandat 6849.584 kb on - strand, within AO356_29435at 6849.715 kb on + strand, within AO356_29435at 6849.786 kb on + strand, within AO356_29435at 6849.786 kb on + strand, within AO356_29435at 6849.786 kb on + strand, within AO356_29435at 6849.823 kb on - strand, within AO356_29435at 6849.834 kb on + strand, within AO356_29435at 6849.834 kb on + strand, within AO356_29435at 6849.835 kb on - strand, within AO356_29435at 6849.835 kb on - strand, within AO356_29435at 6850.135 kb on + strand, within AO356_29435at 6850.136 kb on - strand, within AO356_29435

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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6,844,506 - AO356_29420 0.83 -1.0
6,844,656 + +0.2
6,844,656 + -0.2
6,844,771 + +0.3
6,845,415 + +0.5
6,845,427 - +1.3
6,845,450 + +1.3
6,845,450 + +1.7
6,845,451 - -0.5
6,845,459 + +0.4
6,845,591 + +1.8
6,845,754 + -0.4
6,845,754 + -1.0
6,845,895 - AO356_29430 0.13 +0.3
6,845,911 + AO356_29430 0.13 -1.4
6,845,911 + AO356_29430 0.13 -0.9
6,845,912 - AO356_29430 0.13 +1.0
6,846,337 + AO356_29430 0.25 -1.5
6,846,338 - AO356_29430 0.25 +1.1
6,846,412 - AO356_29430 0.27 +0.5
6,846,563 - AO356_29430 0.31 -0.6
6,846,563 - AO356_29430 0.31 +0.3
6,846,590 - AO356_29430 0.31 -2.3
6,846,590 - AO356_29430 0.31 -0.4
6,846,743 + AO356_29430 0.36 -2.5
6,846,743 + AO356_29430 0.36 -0.7
6,846,744 - AO356_29430 0.36 -1.4
6,846,744 - AO356_29430 0.36 -1.0
6,846,934 + AO356_29430 0.41 +0.1
6,847,470 + AO356_29430 0.55 +0.0
6,849,015 + -0.6
6,849,015 + -2.4
6,849,016 - +0.4
6,849,035 - -0.1
6,849,252 + +0.9
6,849,584 - AO356_29435 0.38 +1.0
6,849,715 + AO356_29435 0.50 +0.4
6,849,786 + AO356_29435 0.56 +0.6
6,849,786 + AO356_29435 0.56 -0.9
6,849,786 + AO356_29435 0.56 +0.7
6,849,823 - AO356_29435 0.59 -0.4
6,849,834 + AO356_29435 0.60 +2.1
6,849,834 + AO356_29435 0.60 +0.1
6,849,835 - AO356_29435 0.60 -0.2
6,849,835 - AO356_29435 0.60 +0.5
6,850,135 + AO356_29435 0.87 +0.0
6,850,136 - AO356_29435 0.87 -1.0

Or see this region's nucleotide sequence