Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28950 and AO356_28955 are separated by 105 nucleotides AO356_28955 and AO356_28960 are separated by 268 nucleotides AO356_28960 and AO356_28965 are separated by 59 nucleotides
AO356_28950: AO356_28950 - LysR family transcriptional regulator, at 6,731,036 to 6,731,926
_28950
AO356_28955: AO356_28955 - hypothetical protein, at 6,732,032 to 6,732,301
_28955
AO356_28960: AO356_28960 - FMN reductase, at 6,732,570 to 6,733,133
_28960
AO356_28965: AO356_28965 - monooxygenase, at 6,733,193 to 6,734,380
_28965
Position (kb)
6732
6733
6734 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6731.598 kb on + strand, within AO356_28950 at 6731.633 kb on + strand, within AO356_28950 at 6731.663 kb on + strand, within AO356_28950 at 6731.664 kb on - strand, within AO356_28950 at 6731.664 kb on - strand, within AO356_28950 at 6731.664 kb on - strand, within AO356_28950 at 6731.767 kb on + strand, within AO356_28950 at 6731.768 kb on - strand, within AO356_28950 at 6731.805 kb on + strand, within AO356_28950 at 6731.806 kb on - strand, within AO356_28950 at 6731.885 kb on + strand at 6732.034 kb on - strand at 6732.082 kb on + strand, within AO356_28955 at 6732.141 kb on + strand, within AO356_28955 at 6732.141 kb on + strand, within AO356_28955 at 6732.142 kb on - strand, within AO356_28955 at 6732.201 kb on + strand, within AO356_28955 at 6732.333 kb on - strand at 6732.354 kb on - strand at 6732.354 kb on - strand at 6732.533 kb on - strand at 6732.533 kb on - strand at 6732.533 kb on - strand at 6732.533 kb on - strand at 6732.536 kb on + strand at 6732.566 kb on + strand at 6733.029 kb on + strand, within AO356_28960 at 6733.815 kb on + strand, within AO356_28965 at 6733.856 kb on - strand, within AO356_28965 at 6733.919 kb on - strand, within AO356_28965 at 6733.953 kb on - strand, within AO356_28965 at 6734.015 kb on + strand, within AO356_28965 at 6734.015 kb on + strand, within AO356_28965 at 6734.015 kb on + strand, within AO356_28965 at 6734.015 kb on + strand, within AO356_28965 at 6734.015 kb on + strand, within AO356_28965 at 6734.016 kb on - strand, within AO356_28965 at 6734.016 kb on - strand, within AO356_28965 at 6734.016 kb on - strand, within AO356_28965
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 6,731,598 + AO356_28950 0.63 -2.1 6,731,633 + AO356_28950 0.67 -0.2 6,731,663 + AO356_28950 0.70 +0.2 6,731,664 - AO356_28950 0.70 -1.1 6,731,664 - AO356_28950 0.70 -0.4 6,731,664 - AO356_28950 0.70 -1.1 6,731,767 + AO356_28950 0.82 +0.5 6,731,768 - AO356_28950 0.82 -0.9 6,731,805 + AO356_28950 0.86 -0.2 6,731,806 - AO356_28950 0.86 -0.2 6,731,885 + +0.4 6,732,034 - +1.2 6,732,082 + AO356_28955 0.19 -0.4 6,732,141 + AO356_28955 0.40 +0.3 6,732,141 + AO356_28955 0.40 +0.8 6,732,142 - AO356_28955 0.41 -0.3 6,732,201 + AO356_28955 0.63 +0.1 6,732,333 - -0.9 6,732,354 - -0.2 6,732,354 - +0.8 6,732,533 - -0.3 6,732,533 - -0.6 6,732,533 - +0.4 6,732,533 - -0.3 6,732,536 + +0.7 6,732,566 + -0.2 6,733,029 + AO356_28960 0.81 -2.8 6,733,815 + AO356_28965 0.52 +0.4 6,733,856 - AO356_28965 0.56 -1.4 6,733,919 - AO356_28965 0.61 -0.2 6,733,953 - AO356_28965 0.64 +0.5 6,734,015 + AO356_28965 0.69 +0.9 6,734,015 + AO356_28965 0.69 -0.1 6,734,015 + AO356_28965 0.69 +0.6 6,734,015 + AO356_28965 0.69 +1.3 6,734,015 + AO356_28965 0.69 -0.1 6,734,016 - AO356_28965 0.69 -0.3 6,734,016 - AO356_28965 0.69 +0.6 6,734,016 - AO356_28965 0.69 -2.0
Or see this region's nucleotide sequence