Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28840 and AO356_28845 overlap by 7 nucleotides AO356_28845 and AO356_28850 are separated by 43 nucleotides AO356_28850 and AO356_28855 are separated by 271 nucleotides
AO356_28840: AO356_28840 - iron-siderophore ABC transporter permease, at 6,707,241 to 6,708,302
_28840
AO356_28845: AO356_28845 - ferrichrome ABC transporter, at 6,708,296 to 6,709,051
_28845
AO356_28850: AO356_28850 - chemotaxis protein, at 6,709,095 to 6,711,056
_28850
AO356_28855: AO356_28855 - structural protein MipA, at 6,711,328 to 6,712,125
_28855
Position (kb)
6709
6710
6711
6712 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6708.400 kb on - strand, within AO356_28845 at 6708.516 kb on - strand, within AO356_28845 at 6708.516 kb on - strand, within AO356_28845 at 6708.558 kb on - strand, within AO356_28845 at 6708.980 kb on + strand at 6708.981 kb on - strand at 6709.286 kb on + strand at 6709.287 kb on - strand at 6709.287 kb on - strand at 6709.698 kb on - strand, within AO356_28850 at 6709.770 kb on - strand, within AO356_28850 at 6710.070 kb on + strand, within AO356_28850 at 6710.101 kb on + strand, within AO356_28850 at 6710.101 kb on + strand, within AO356_28850 at 6710.102 kb on - strand, within AO356_28850 at 6710.102 kb on - strand, within AO356_28850 at 6710.423 kb on - strand, within AO356_28850 at 6710.494 kb on - strand, within AO356_28850 at 6710.612 kb on + strand, within AO356_28850 at 6710.615 kb on - strand, within AO356_28850 at 6710.681 kb on + strand, within AO356_28850 at 6710.682 kb on - strand, within AO356_28850 at 6710.956 kb on + strand at 6710.956 kb on + strand at 6710.957 kb on - strand at 6710.960 kb on + strand at 6711.102 kb on + strand at 6711.107 kb on + strand at 6711.108 kb on - strand at 6711.108 kb on - strand at 6711.108 kb on - strand at 6711.119 kb on + strand at 6711.120 kb on - strand at 6711.121 kb on + strand at 6711.121 kb on + strand at 6711.122 kb on - strand at 6711.122 kb on - strand at 6711.122 kb on - strand at 6711.122 kb on - strand at 6711.194 kb on + strand at 6711.194 kb on + strand at 6711.195 kb on - strand at 6711.195 kb on - strand at 6711.195 kb on - strand at 6711.196 kb on + strand at 6711.261 kb on - strand at 6711.261 kb on - strand at 6711.264 kb on + strand at 6711.374 kb on + strand at 6711.375 kb on - strand at 6711.485 kb on - strand, within AO356_28855 at 6711.485 kb on - strand, within AO356_28855 at 6711.485 kb on - strand, within AO356_28855 at 6711.485 kb on - strand, within AO356_28855 at 6711.486 kb on + strand, within AO356_28855 at 6711.526 kb on + strand, within AO356_28855 at 6711.649 kb on + strand, within AO356_28855 at 6711.650 kb on - strand, within AO356_28855 at 6711.650 kb on - strand, within AO356_28855 at 6711.898 kb on + strand, within AO356_28855 at 6711.899 kb on - strand, within AO356_28855 at 6711.943 kb on + strand, within AO356_28855 at 6711.944 kb on - strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.991 kb on + strand, within AO356_28855 at 6711.992 kb on - strand, within AO356_28855 at 6711.992 kb on - strand, within AO356_28855
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 6,708,400 - AO356_28845 0.14 -1.9 6,708,516 - AO356_28845 0.29 +1.0 6,708,516 - AO356_28845 0.29 -1.8 6,708,558 - AO356_28845 0.35 -3.5 6,708,980 + -1.7 6,708,981 - +0.3 6,709,286 + +1.2 6,709,287 - -1.2 6,709,287 - -2.5 6,709,698 - AO356_28850 0.31 -1.2 6,709,770 - AO356_28850 0.34 -0.2 6,710,070 + AO356_28850 0.50 -0.8 6,710,101 + AO356_28850 0.51 +1.2 6,710,101 + AO356_28850 0.51 -0.4 6,710,102 - AO356_28850 0.51 +0.9 6,710,102 - AO356_28850 0.51 +0.4 6,710,423 - AO356_28850 0.68 -1.1 6,710,494 - AO356_28850 0.71 +0.7 6,710,612 + AO356_28850 0.77 -0.3 6,710,615 - AO356_28850 0.77 +1.7 6,710,681 + AO356_28850 0.81 +0.8 6,710,682 - AO356_28850 0.81 -0.6 6,710,956 + +0.6 6,710,956 + -1.5 6,710,957 - +0.7 6,710,960 + +1.1 6,711,102 + -0.3 6,711,107 + +0.1 6,711,108 - -0.8 6,711,108 - -0.9 6,711,108 - -0.1 6,711,119 + -1.1 6,711,120 - +1.1 6,711,121 + +1.7 6,711,121 + +0.2 6,711,122 - -0.1 6,711,122 - -0.3 6,711,122 - -0.2 6,711,122 - +0.4 6,711,194 + +0.9 6,711,194 + +0.2 6,711,195 - +1.4 6,711,195 - -0.5 6,711,195 - +2.0 6,711,196 + +0.4 6,711,261 - -0.7 6,711,261 - +0.5 6,711,264 + +1.1 6,711,374 + +0.1 6,711,375 - -0.4 6,711,485 - AO356_28855 0.20 +0.2 6,711,485 - AO356_28855 0.20 +0.0 6,711,485 - AO356_28855 0.20 +0.7 6,711,485 - AO356_28855 0.20 -0.7 6,711,486 + AO356_28855 0.20 -0.4 6,711,526 + AO356_28855 0.25 +0.5 6,711,649 + AO356_28855 0.40 +1.2 6,711,650 - AO356_28855 0.40 +0.5 6,711,650 - AO356_28855 0.40 +0.3 6,711,898 + AO356_28855 0.71 +0.7 6,711,899 - AO356_28855 0.72 -0.4 6,711,943 + AO356_28855 0.77 +0.5 6,711,944 - AO356_28855 0.77 -0.3 6,711,991 + AO356_28855 0.83 -1.6 6,711,991 + AO356_28855 0.83 -1.5 6,711,991 + AO356_28855 0.83 -0.2 6,711,991 + AO356_28855 0.83 +1.0 6,711,991 + AO356_28855 0.83 +0.0 6,711,992 - AO356_28855 0.83 -0.7 6,711,992 - AO356_28855 0.83 +0.3
Or see this region's nucleotide sequence