Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28590 and AO356_28595 are separated by 75 nucleotides AO356_28595 and AO356_28600 are separated by 16 nucleotides AO356_28600 and AO356_28605 are separated by 167 nucleotides
AO356_28590: AO356_28590 - sucrose alpha-glucosidase (EC 3.2.1.48) (from data) , at 6,645,342 to 6,646,844
_28590
AO356_28595: AO356_28595 - transcriptional regulator, at 6,646,920 to 6,647,912
_28595
AO356_28600: AO356_28600 - TetR family transcriptional regulator, at 6,647,929 to 6,648,516
_28600
AO356_28605: AO356_28605 - N-ethylmaleimide reductase, at 6,648,684 to 6,649,778
_28605
Position (kb)
6646
6647
6648 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6645.979 kb on - strand, within AO356_28590 at 6645.979 kb on - strand, within AO356_28590 at 6645.979 kb on - strand, within AO356_28590 at 6646.009 kb on - strand, within AO356_28590 at 6646.062 kb on + strand, within AO356_28590 at 6646.062 kb on + strand, within AO356_28590 at 6646.063 kb on - strand, within AO356_28590 at 6646.063 kb on - strand, within AO356_28590 at 6646.110 kb on + strand, within AO356_28590 at 6646.110 kb on + strand, within AO356_28590 at 6646.200 kb on + strand, within AO356_28590 at 6646.744 kb on - strand at 6647.389 kb on - strand, within AO356_28595 at 6647.590 kb on - strand, within AO356_28595 at 6647.621 kb on + strand, within AO356_28595 at 6647.745 kb on + strand, within AO356_28595 at 6647.745 kb on + strand, within AO356_28595 at 6648.264 kb on - strand, within AO356_28600 at 6648.713 kb on + strand at 6648.713 kb on + strand at 6648.714 kb on - strand at 6648.714 kb on - strand at 6648.813 kb on + strand, within AO356_28605 at 6648.813 kb on + strand, within AO356_28605 at 6648.906 kb on + strand, within AO356_28605 at 6648.907 kb on - strand, within AO356_28605 at 6648.907 kb on - strand, within AO356_28605
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 6,645,979 - AO356_28590 0.42 -0.4 6,645,979 - AO356_28590 0.42 -0.7 6,645,979 - AO356_28590 0.42 +1.3 6,646,009 - AO356_28590 0.44 -0.7 6,646,062 + AO356_28590 0.48 +1.0 6,646,062 + AO356_28590 0.48 -0.7 6,646,063 - AO356_28590 0.48 +1.6 6,646,063 - AO356_28590 0.48 -1.3 6,646,110 + AO356_28590 0.51 -2.9 6,646,110 + AO356_28590 0.51 -0.3 6,646,200 + AO356_28590 0.57 +0.1 6,646,744 - +0.4 6,647,389 - AO356_28595 0.47 -2.8 6,647,590 - AO356_28595 0.67 -0.6 6,647,621 + AO356_28595 0.71 -1.4 6,647,745 + AO356_28595 0.83 +0.3 6,647,745 + AO356_28595 0.83 -2.0 6,648,264 - AO356_28600 0.57 +0.4 6,648,713 + +0.8 6,648,713 + -2.4 6,648,714 - -0.7 6,648,714 - +1.9 6,648,813 + AO356_28605 0.12 -0.4 6,648,813 + AO356_28605 0.12 +0.2 6,648,906 + AO356_28605 0.20 -1.4 6,648,907 - AO356_28605 0.20 -0.2 6,648,907 - AO356_28605 0.20 -0.5
Or see this region's nucleotide sequence