Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28365 and AO356_28370 overlap by 9 nucleotides AO356_28370 and AO356_28375 are separated by 56 nucleotides AO356_28375 and AO356_28380 are separated by 72 nucleotides
AO356_28365: AO356_28365 - Fis family transcriptional regulator, at 6,597,350 to 6,598,453
_28365
AO356_28370: AO356_28370 - ABC transporter ATP-binding protein, at 6,598,445 to 6,599,242
_28370
AO356_28375: AO356_28375 - ABC transporter permease, at 6,599,299 to 6,600,624
_28375
AO356_28380: AO356_28380 - ABC transporter permease, at 6,600,697 to 6,601,764
_28380
Position (kb)
6599
6600
6601 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6598.510 kb on - strand at 6598.587 kb on + strand, within AO356_28370 at 6598.851 kb on + strand, within AO356_28370 at 6598.852 kb on - strand, within AO356_28370 at 6598.852 kb on - strand, within AO356_28370 at 6598.852 kb on - strand, within AO356_28370 at 6599.629 kb on + strand, within AO356_28375 at 6599.629 kb on + strand, within AO356_28375 at 6599.663 kb on + strand, within AO356_28375 at 6599.663 kb on + strand, within AO356_28375 at 6599.663 kb on + strand, within AO356_28375 at 6599.664 kb on - strand, within AO356_28375 at 6599.667 kb on - strand, within AO356_28375 at 6600.024 kb on - strand, within AO356_28375 at 6600.068 kb on + strand, within AO356_28375 at 6600.171 kb on - strand, within AO356_28375 at 6600.228 kb on + strand, within AO356_28375 at 6600.389 kb on + strand, within AO356_28375 at 6600.390 kb on - strand, within AO356_28375 at 6600.390 kb on - strand, within AO356_28375 at 6600.452 kb on + strand, within AO356_28375 at 6600.453 kb on - strand, within AO356_28375 at 6600.461 kb on + strand, within AO356_28375 at 6600.462 kb on - strand, within AO356_28375 at 6600.537 kb on - strand at 6600.639 kb on + strand at 6600.653 kb on + strand at 6600.803 kb on - strand at 6601.014 kb on - strand, within AO356_28380 at 6601.221 kb on - strand, within AO356_28380 at 6601.256 kb on - strand, within AO356_28380 at 6601.370 kb on + strand, within AO356_28380 at 6601.478 kb on - strand, within AO356_28380 at 6601.490 kb on + strand, within AO356_28380 at 6601.490 kb on + strand, within AO356_28380 at 6601.491 kb on - strand, within AO356_28380
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 6,598,510 - -0.3 6,598,587 + AO356_28370 0.18 -0.4 6,598,851 + AO356_28370 0.51 +0.3 6,598,852 - AO356_28370 0.51 +0.8 6,598,852 - AO356_28370 0.51 +1.5 6,598,852 - AO356_28370 0.51 -1.0 6,599,629 + AO356_28375 0.25 -0.1 6,599,629 + AO356_28375 0.25 +0.2 6,599,663 + AO356_28375 0.27 +1.2 6,599,663 + AO356_28375 0.27 +0.3 6,599,663 + AO356_28375 0.27 -0.8 6,599,664 - AO356_28375 0.28 +1.1 6,599,667 - AO356_28375 0.28 +0.6 6,600,024 - AO356_28375 0.55 -0.5 6,600,068 + AO356_28375 0.58 +0.5 6,600,171 - AO356_28375 0.66 -0.4 6,600,228 + AO356_28375 0.70 -0.4 6,600,389 + AO356_28375 0.82 +0.6 6,600,390 - AO356_28375 0.82 +1.8 6,600,390 - AO356_28375 0.82 -2.9 6,600,452 + AO356_28375 0.87 -1.5 6,600,453 - AO356_28375 0.87 -0.3 6,600,461 + AO356_28375 0.88 -0.1 6,600,462 - AO356_28375 0.88 -2.8 6,600,537 - -0.3 6,600,639 + +1.2 6,600,653 + +0.9 6,600,803 - -1.0 6,601,014 - AO356_28380 0.30 -1.2 6,601,221 - AO356_28380 0.49 -2.0 6,601,256 - AO356_28380 0.52 -0.1 6,601,370 + AO356_28380 0.63 +1.0 6,601,478 - AO356_28380 0.73 -0.2 6,601,490 + AO356_28380 0.74 +2.0 6,601,490 + AO356_28380 0.74 +0.2 6,601,491 - AO356_28380 0.74 +0.9
Or see this region's nucleotide sequence