Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27840

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27835 and AO356_27840 are separated by 95 nucleotidesAO356_27840 and AO356_27845 are separated by 105 nucleotidesAO356_27845 and AO356_27850 overlap by 4 nucleotides AO356_27835: AO356_27835 - hypothetical protein, at 6,352,212 to 6,353,501 _27835 AO356_27840: AO356_27840 - sodium:proton antiporter, at 6,353,597 to 6,355,099 _27840 AO356_27845: AO356_27845 - hydrolase, at 6,355,205 to 6,356,026 _27845 AO356_27850: AO356_27850 - glucose-6-phosphate dehydrogenase, at 6,356,023 to 6,357,543 _27850 Position (kb) 6353 6354 6355 6356Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6352.783 kb on - strand, within AO356_27835at 6352.893 kb on - strand, within AO356_27835at 6353.054 kb on + strand, within AO356_27835at 6353.055 kb on - strand, within AO356_27835at 6353.098 kb on + strand, within AO356_27835at 6353.099 kb on - strand, within AO356_27835at 6353.099 kb on - strand, within AO356_27835at 6353.132 kb on + strand, within AO356_27835at 6353.133 kb on - strand, within AO356_27835at 6353.535 kb on + strandat 6353.544 kb on + strandat 6353.578 kb on + strandat 6353.578 kb on + strandat 6353.582 kb on + strandat 6353.657 kb on + strandat 6353.658 kb on - strandat 6353.658 kb on - strandat 6353.658 kb on - strandat 6353.658 kb on - strandat 6353.783 kb on + strand, within AO356_27840at 6353.808 kb on + strand, within AO356_27840at 6353.856 kb on - strand, within AO356_27840at 6353.856 kb on - strand, within AO356_27840at 6353.856 kb on - strand, within AO356_27840at 6353.856 kb on - strand, within AO356_27840at 6353.856 kb on - strand, within AO356_27840at 6353.856 kb on - strand, within AO356_27840at 6353.919 kb on - strand, within AO356_27840at 6354.083 kb on + strand, within AO356_27840at 6354.083 kb on + strand, within AO356_27840at 6354.083 kb on + strand, within AO356_27840at 6354.083 kb on + strand, within AO356_27840at 6354.084 kb on - strand, within AO356_27840at 6354.084 kb on - strand, within AO356_27840at 6354.527 kb on - strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.840 kb on - strand, within AO356_27840at 6354.840 kb on - strand, within AO356_27840at 6355.016 kb on + strandat 6355.046 kb on + strandat 6355.047 kb on - strandat 6355.047 kb on - strandat 6355.077 kb on - strandat 6355.088 kb on + strandat 6355.088 kb on + strandat 6355.089 kb on - strandat 6355.089 kb on - strandat 6355.089 kb on - strandat 6355.089 kb on - strandat 6355.096 kb on - strandat 6355.096 kb on - strandat 6355.096 kb on - strandat 6355.097 kb on + strandat 6355.206 kb on + strandat 6355.221 kb on + strandat 6355.222 kb on - strandat 6355.222 kb on - strandat 6355.222 kb on - strandat 6355.271 kb on + strandat 6355.271 kb on + strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.461 kb on + strand, within AO356_27845at 6355.584 kb on + strand, within AO356_27845at 6355.723 kb on - strand, within AO356_27845at 6355.761 kb on + strand, within AO356_27845at 6355.762 kb on - strand, within AO356_27845at 6355.762 kb on - strand, within AO356_27845at 6355.762 kb on - strand, within AO356_27845

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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6,352,783 - AO356_27835 0.44 +1.7
6,352,893 - AO356_27835 0.53 +0.5
6,353,054 + AO356_27835 0.65 +0.5
6,353,055 - AO356_27835 0.65 -0.1
6,353,098 + AO356_27835 0.69 +1.0
6,353,099 - AO356_27835 0.69 +0.3
6,353,099 - AO356_27835 0.69 -0.4
6,353,132 + AO356_27835 0.71 -0.9
6,353,133 - AO356_27835 0.71 -0.3
6,353,535 + +0.8
6,353,544 + -0.3
6,353,578 + +0.8
6,353,578 + +1.7
6,353,582 + -2.2
6,353,657 + +0.7
6,353,658 - -1.6
6,353,658 - -0.7
6,353,658 - +0.5
6,353,658 - -1.1
6,353,783 + AO356_27840 0.12 -1.3
6,353,808 + AO356_27840 0.14 -0.6
6,353,856 - AO356_27840 0.17 -3.3
6,353,856 - AO356_27840 0.17 +0.2
6,353,856 - AO356_27840 0.17 +1.7
6,353,856 - AO356_27840 0.17 -0.3
6,353,856 - AO356_27840 0.17 -0.8
6,353,856 - AO356_27840 0.17 -0.5
6,353,919 - AO356_27840 0.21 -1.1
6,354,083 + AO356_27840 0.32 -1.1
6,354,083 + AO356_27840 0.32 -0.0
6,354,083 + AO356_27840 0.32 -1.1
6,354,083 + AO356_27840 0.32 -0.9
6,354,084 - AO356_27840 0.32 -1.5
6,354,084 - AO356_27840 0.32 +0.2
6,354,527 - AO356_27840 0.62 -2.2
6,354,839 + AO356_27840 0.83 -0.2
6,354,839 + AO356_27840 0.83 -0.6
6,354,839 + AO356_27840 0.83 -2.4
6,354,839 + AO356_27840 0.83 -1.1
6,354,840 - AO356_27840 0.83 -2.4
6,354,840 - AO356_27840 0.83 -0.6
6,355,016 + -1.3
6,355,046 + -0.8
6,355,047 - -1.5
6,355,047 - +0.8
6,355,077 - -0.2
6,355,088 + -0.7
6,355,088 + -0.8
6,355,089 - -0.7
6,355,089 - -2.2
6,355,089 - -0.8
6,355,089 - +1.0
6,355,096 - +0.6
6,355,096 - -0.9
6,355,096 - +0.0
6,355,097 + -0.3
6,355,206 + +0.5
6,355,221 + +1.4
6,355,222 - +0.9
6,355,222 - -1.2
6,355,222 - -0.5
6,355,271 + +2.2
6,355,271 + -0.7
6,355,272 - +0.4
6,355,272 - -0.3
6,355,272 - -1.0
6,355,272 - -0.4
6,355,272 - +0.3
6,355,461 + AO356_27845 0.31 +0.7
6,355,584 + AO356_27845 0.46 -1.3
6,355,723 - AO356_27845 0.63 +1.2
6,355,761 + AO356_27845 0.68 +1.7
6,355,762 - AO356_27845 0.68 -2.0
6,355,762 - AO356_27845 0.68 +2.2
6,355,762 - AO356_27845 0.68 -1.8

Or see this region's nucleotide sequence