Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26940 and AO356_26945 are separated by 353 nucleotides AO356_26945 and AO356_26950 are separated by 166 nucleotides
AO356_26940: AO356_26940 - dehydrogenase, at 6,133,369 to 6,134,226
_26940
AO356_26945: AO356_26945 - hypothetical protein, at 6,134,580 to 6,135,191
_26945
AO356_26950: AO356_26950 - ATP-dependent DNA ligase, at 6,135,358 to 6,137,970
_26950
Position (kb)
6134
6135
6136 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6133.809 kb on + strand, within AO356_26940 at 6133.810 kb on - strand, within AO356_26940 at 6133.818 kb on + strand, within AO356_26940 at 6133.819 kb on - strand, within AO356_26940 at 6133.893 kb on + strand, within AO356_26940 at 6133.894 kb on - strand, within AO356_26940 at 6133.939 kb on + strand, within AO356_26940 at 6134.146 kb on + strand at 6134.146 kb on + strand at 6134.147 kb on - strand at 6134.176 kb on + strand at 6134.176 kb on + strand at 6134.176 kb on + strand at 6134.176 kb on + strand at 6134.177 kb on - strand at 6134.177 kb on - strand at 6134.177 kb on - strand at 6134.284 kb on + strand at 6134.287 kb on + strand at 6134.287 kb on + strand at 6134.287 kb on + strand at 6134.288 kb on - strand at 6134.288 kb on - strand at 6134.501 kb on - strand at 6134.501 kb on - strand at 6134.667 kb on + strand, within AO356_26945 at 6134.809 kb on - strand, within AO356_26945 at 6134.916 kb on + strand, within AO356_26945 at 6134.916 kb on + strand, within AO356_26945 at 6134.917 kb on - strand, within AO356_26945 at 6134.917 kb on - strand, within AO356_26945 at 6134.917 kb on - strand, within AO356_26945 at 6134.917 kb on - strand, within AO356_26945 at 6134.917 kb on - strand, within AO356_26945 at 6134.919 kb on - strand, within AO356_26945 at 6135.075 kb on + strand, within AO356_26945 at 6135.076 kb on - strand, within AO356_26945 at 6135.110 kb on - strand, within AO356_26945 at 6135.153 kb on + strand at 6135.168 kb on + strand at 6135.189 kb on + strand at 6135.287 kb on - strand at 6135.360 kb on - strand at 6135.360 kb on - strand at 6135.402 kb on + strand at 6135.402 kb on + strand at 6135.605 kb on + strand at 6135.799 kb on + strand, within AO356_26950 at 6135.799 kb on + strand, within AO356_26950 at 6135.800 kb on - strand, within AO356_26950 at 6136.160 kb on + strand, within AO356_26950 at 6136.160 kb on + strand, within AO356_26950 at 6136.160 kb on + strand, within AO356_26950 at 6136.161 kb on - strand, within AO356_26950 at 6136.161 kb on - strand, within AO356_26950
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 6,133,809 + AO356_26940 0.51 -0.0 6,133,810 - AO356_26940 0.51 -0.9 6,133,818 + AO356_26940 0.52 -2.1 6,133,819 - AO356_26940 0.52 -3.0 6,133,893 + AO356_26940 0.61 +0.3 6,133,894 - AO356_26940 0.61 +2.0 6,133,939 + AO356_26940 0.66 +0.5 6,134,146 + -0.3 6,134,146 + +0.2 6,134,147 - +1.1 6,134,176 + +0.0 6,134,176 + -1.1 6,134,176 + +0.9 6,134,176 + +0.1 6,134,177 - -0.1 6,134,177 - +0.2 6,134,177 - +0.0 6,134,284 + +0.1 6,134,287 + +1.8 6,134,287 + -0.3 6,134,287 + +0.5 6,134,288 - +0.6 6,134,288 - +0.6 6,134,501 - +0.9 6,134,501 - -0.5 6,134,667 + AO356_26945 0.14 +0.2 6,134,809 - AO356_26945 0.37 +0.4 6,134,916 + AO356_26945 0.55 +0.1 6,134,916 + AO356_26945 0.55 -0.5 6,134,917 - AO356_26945 0.55 +1.6 6,134,917 - AO356_26945 0.55 +0.7 6,134,917 - AO356_26945 0.55 +0.6 6,134,917 - AO356_26945 0.55 +0.3 6,134,917 - AO356_26945 0.55 +1.7 6,134,919 - AO356_26945 0.55 -0.4 6,135,075 + AO356_26945 0.81 +1.1 6,135,076 - AO356_26945 0.81 -1.1 6,135,110 - AO356_26945 0.87 +0.1 6,135,153 + -1.9 6,135,168 + -0.0 6,135,189 + -0.8 6,135,287 - +0.8 6,135,360 - -0.5 6,135,360 - -0.0 6,135,402 + +0.5 6,135,402 + +1.6 6,135,605 + +0.4 6,135,799 + AO356_26950 0.17 +0.9 6,135,799 + AO356_26950 0.17 +1.6 6,135,800 - AO356_26950 0.17 +0.3 6,136,160 + AO356_26950 0.31 -0.6 6,136,160 + AO356_26950 0.31 +0.3 6,136,160 + AO356_26950 0.31 -0.1 6,136,161 - AO356_26950 0.31 -0.5 6,136,161 - AO356_26950 0.31 +0.2
Or see this region's nucleotide sequence