Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26695

Experiment: methylglyoxal 0.016 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_26685 and AO356_26690 are separated by 75 nucleotidesAO356_26690 and AO356_26695 overlap by 1 nucleotidesAO356_26695 and AO356_26700 are separated by 72 nucleotides AO356_26685: AO356_26685 - phosphate import ATP-binding protein PstB, at 6,076,190 to 6,076,951 _26685 AO356_26690: AO356_26690 - phosphate ABC transporter permease, at 6,077,027 to 6,077,938 _26690 AO356_26695: AO356_26695 - phosphate ABC transporter permease, at 6,077,938 to 6,078,903 _26695 AO356_26700: AO356_26700 - phosphate ABC transporter substrate-binding protein, at 6,078,976 to 6,080,007 _26700 Position (kb) 6077 6078 6079Strain fitness (log2 ratio) -2 -1 0 1 2at 6076.956 kb on - strandat 6077.001 kb on - strandat 6077.029 kb on - strandat 6077.031 kb on + strandat 6077.031 kb on + strandat 6077.051 kb on - strandat 6077.062 kb on + strandat 6077.152 kb on - strand, within AO356_26690at 6077.152 kb on - strand, within AO356_26690at 6077.152 kb on - strand, within AO356_26690at 6077.208 kb on + strand, within AO356_26690at 6077.209 kb on - strand, within AO356_26690at 6077.218 kb on - strand, within AO356_26690at 6077.479 kb on + strand, within AO356_26690at 6077.506 kb on - strand, within AO356_26690at 6077.506 kb on - strand, within AO356_26690at 6077.778 kb on + strand, within AO356_26690at 6077.779 kb on - strand, within AO356_26690at 6077.779 kb on - strand, within AO356_26690at 6077.943 kb on + strandat 6077.943 kb on + strandat 6077.944 kb on - strandat 6077.960 kb on + strandat 6078.139 kb on + strand, within AO356_26695at 6078.473 kb on + strand, within AO356_26695at 6078.668 kb on + strand, within AO356_26695at 6078.668 kb on + strand, within AO356_26695at 6078.669 kb on - strand, within AO356_26695at 6078.700 kb on + strand, within AO356_26695at 6078.909 kb on - strandat 6079.152 kb on - strand, within AO356_26700at 6079.338 kb on - strand, within AO356_26700at 6079.368 kb on + strand, within AO356_26700at 6079.368 kb on + strand, within AO356_26700at 6079.369 kb on - strand, within AO356_26700at 6079.369 kb on - strand, within AO356_26700at 6079.653 kb on + strand, within AO356_26700at 6079.673 kb on + strand, within AO356_26700at 6079.674 kb on - strand, within AO356_26700at 6079.830 kb on - strand, within AO356_26700at 6079.883 kb on + strand, within AO356_26700at 6079.883 kb on + strand, within AO356_26700at 6079.883 kb on + strand, within AO356_26700at 6079.884 kb on - strand, within AO356_26700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
remove
6,076,956 - -1.0
6,077,001 - +0.1
6,077,029 - +0.6
6,077,031 + +0.5
6,077,031 + +0.1
6,077,051 - -1.0
6,077,062 + +0.3
6,077,152 - AO356_26690 0.14 +0.7
6,077,152 - AO356_26690 0.14 -0.6
6,077,152 - AO356_26690 0.14 +1.7
6,077,208 + AO356_26690 0.20 +0.6
6,077,209 - AO356_26690 0.20 -0.3
6,077,218 - AO356_26690 0.21 -0.6
6,077,479 + AO356_26690 0.50 +0.2
6,077,506 - AO356_26690 0.53 +0.0
6,077,506 - AO356_26690 0.53 -0.4
6,077,778 + AO356_26690 0.82 +0.6
6,077,779 - AO356_26690 0.82 -0.6
6,077,779 - AO356_26690 0.82 -1.9
6,077,943 + -1.2
6,077,943 + -1.9
6,077,944 - -0.3
6,077,960 + +0.1
6,078,139 + AO356_26695 0.21 -0.6
6,078,473 + AO356_26695 0.55 -1.1
6,078,668 + AO356_26695 0.76 -1.2
6,078,668 + AO356_26695 0.76 -1.0
6,078,669 - AO356_26695 0.76 -0.1
6,078,700 + AO356_26695 0.79 +0.1
6,078,909 - +0.7
6,079,152 - AO356_26700 0.17 +0.3
6,079,338 - AO356_26700 0.35 -2.2
6,079,368 + AO356_26700 0.38 +0.1
6,079,368 + AO356_26700 0.38 +0.3
6,079,369 - AO356_26700 0.38 +2.4
6,079,369 - AO356_26700 0.38 -1.2
6,079,653 + AO356_26700 0.66 -0.5
6,079,673 + AO356_26700 0.68 +0.6
6,079,674 - AO356_26700 0.68 +1.0
6,079,830 - AO356_26700 0.83 +0.1
6,079,883 + AO356_26700 0.88 -0.5
6,079,883 + AO356_26700 0.88 -0.3
6,079,883 + AO356_26700 0.88 -0.9
6,079,884 - AO356_26700 0.88 -0.6

Or see this region's nucleotide sequence