Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26395

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26385 and AO356_26390 are separated by 177 nucleotidesAO356_26390 and AO356_26395 are separated by 40 nucleotidesAO356_26395 and AO356_26400 are separated by 91 nucleotides AO356_26385: AO356_26385 - LysR family transcriptional regulator, at 5,976,413 to 5,977,348 _26385 AO356_26390: AO356_26390 - hypothetical protein, at 5,977,526 to 5,978,086 _26390 AO356_26395: AO356_26395 - hypothetical protein, at 5,978,127 to 5,978,918 _26395 AO356_26400: AO356_26400 - LysR family transcriptional regulator, at 5,979,010 to 5,979,957 _26400 Position (kb) 5978 5979Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5977.382 kb on + strandat 5977.383 kb on - strandat 5977.383 kb on - strandat 5977.559 kb on - strandat 5977.577 kb on + strandat 5977.577 kb on + strandat 5977.578 kb on - strandat 5977.642 kb on - strand, within AO356_26390at 5977.765 kb on - strand, within AO356_26390at 5977.878 kb on + strand, within AO356_26390at 5978.055 kb on + strandat 5978.055 kb on + strandat 5978.055 kb on + strandat 5978.056 kb on - strandat 5978.056 kb on - strandat 5978.080 kb on + strandat 5978.146 kb on - strandat 5978.284 kb on + strand, within AO356_26395at 5978.285 kb on - strand, within AO356_26395at 5978.848 kb on + strandat 5979.004 kb on + strandat 5979.005 kb on - strandat 5979.338 kb on + strand, within AO356_26400at 5979.426 kb on - strand, within AO356_26400at 5979.437 kb on + strand, within AO356_26400at 5979.758 kb on + strand, within AO356_26400at 5979.758 kb on + strand, within AO356_26400

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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5,977,382 + -0.5
5,977,383 - -0.3
5,977,383 - +1.1
5,977,559 - -1.8
5,977,577 + -0.7
5,977,577 + -0.6
5,977,578 - -1.1
5,977,642 - AO356_26390 0.21 -1.5
5,977,765 - AO356_26390 0.43 -1.0
5,977,878 + AO356_26390 0.63 -0.2
5,978,055 + -0.7
5,978,055 + +1.3
5,978,055 + -1.0
5,978,056 - -0.6
5,978,056 - +0.4
5,978,080 + +2.0
5,978,146 - -0.0
5,978,284 + AO356_26395 0.20 -3.0
5,978,285 - AO356_26395 0.20 -0.3
5,978,848 + -0.9
5,979,004 + +0.3
5,979,005 - -0.4
5,979,338 + AO356_26400 0.35 +0.5
5,979,426 - AO356_26400 0.44 +0.3
5,979,437 + AO356_26400 0.45 +0.6
5,979,758 + AO356_26400 0.79 -0.3
5,979,758 + AO356_26400 0.79 +0.3

Or see this region's nucleotide sequence