Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25210 and AO356_25215 are separated by 2 nucleotides AO356_25215 and AO356_25220 overlap by 8 nucleotides AO356_25220 and AO356_25225 are separated by 10 nucleotides
AO356_25210: AO356_25210 - nitrate reductase, at 5,706,960 to 5,708,498
_25210
AO356_25215: AO356_25215 - nitrate reductase, at 5,708,501 to 5,709,256
_25215
AO356_25220: AO356_25220 - nitrate reductase, at 5,709,249 to 5,709,929
_25220
AO356_25225: AO356_25225 - peptidylprolyl isomerase, at 5,709,940 to 5,710,893
_25225
Position (kb) 5708
5709
5710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5707.560 kb on + strand, within AO356_25210 at 5707.560 kb on + strand, within AO356_25210 at 5707.561 kb on - strand, within AO356_25210 at 5707.642 kb on - strand, within AO356_25210 at 5707.653 kb on + strand, within AO356_25210 at 5707.654 kb on - strand, within AO356_25210 at 5707.779 kb on + strand, within AO356_25210 at 5707.779 kb on + strand, within AO356_25210 at 5707.779 kb on + strand, within AO356_25210 at 5707.780 kb on - strand, within AO356_25210 at 5707.780 kb on - strand, within AO356_25210 at 5707.833 kb on + strand, within AO356_25210 at 5707.834 kb on - strand, within AO356_25210 at 5707.948 kb on - strand, within AO356_25210 at 5707.995 kb on + strand, within AO356_25210 at 5708.199 kb on + strand, within AO356_25210 at 5708.199 kb on + strand, within AO356_25210 at 5708.199 kb on + strand, within AO356_25210 at 5708.200 kb on - strand, within AO356_25210 at 5708.200 kb on - strand, within AO356_25210 at 5708.287 kb on - strand, within AO356_25210 at 5708.287 kb on - strand, within AO356_25210 at 5708.287 kb on - strand, within AO356_25210 at 5708.292 kb on + strand, within AO356_25210 at 5708.292 kb on + strand, within AO356_25210 at 5708.310 kb on + strand, within AO356_25210 at 5708.311 kb on - strand, within AO356_25210 at 5708.311 kb on - strand, within AO356_25210 at 5708.838 kb on - strand, within AO356_25215 at 5708.838 kb on - strand, within AO356_25215 at 5708.838 kb on - strand, within AO356_25215 at 5708.849 kb on + strand, within AO356_25215 at 5708.850 kb on - strand, within AO356_25215 at 5708.850 kb on - strand, within AO356_25215 at 5708.912 kb on + strand, within AO356_25215 at 5708.913 kb on - strand, within AO356_25215 at 5708.913 kb on - strand, within AO356_25215 at 5708.960 kb on + strand, within AO356_25215 at 5709.282 kb on + strand at 5709.282 kb on + strand at 5709.288 kb on + strand at 5709.288 kb on + strand at 5709.289 kb on - strand at 5709.345 kb on + strand, within AO356_25220 at 5709.345 kb on + strand, within AO356_25220 at 5709.345 kb on + strand, within AO356_25220 at 5709.478 kb on - strand, within AO356_25220 at 5709.478 kb on - strand, within AO356_25220
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,707,560 + AO356_25210 0.39 +0.6 5,707,560 + AO356_25210 0.39 -0.4 5,707,561 - AO356_25210 0.39 -0.9 5,707,642 - AO356_25210 0.44 -0.5 5,707,653 + AO356_25210 0.45 +1.0 5,707,654 - AO356_25210 0.45 +0.1 5,707,779 + AO356_25210 0.53 -0.3 5,707,779 + AO356_25210 0.53 -0.1 5,707,779 + AO356_25210 0.53 -0.0 5,707,780 - AO356_25210 0.53 +0.6 5,707,780 - AO356_25210 0.53 +1.2 5,707,833 + AO356_25210 0.57 -0.5 5,707,834 - AO356_25210 0.57 -2.9 5,707,948 - AO356_25210 0.64 +0.2 5,707,995 + AO356_25210 0.67 -0.1 5,708,199 + AO356_25210 0.81 +0.9 5,708,199 + AO356_25210 0.81 -0.7 5,708,199 + AO356_25210 0.81 +0.5 5,708,200 - AO356_25210 0.81 +0.7 5,708,200 - AO356_25210 0.81 -0.1 5,708,287 - AO356_25210 0.86 +0.8 5,708,287 - AO356_25210 0.86 +1.0 5,708,287 - AO356_25210 0.86 -1.8 5,708,292 + AO356_25210 0.87 +0.1 5,708,292 + AO356_25210 0.87 -2.2 5,708,310 + AO356_25210 0.88 -1.4 5,708,311 - AO356_25210 0.88 +0.1 5,708,311 - AO356_25210 0.88 -0.4 5,708,838 - AO356_25215 0.45 -1.0 5,708,838 - AO356_25215 0.45 +2.2 5,708,838 - AO356_25215 0.45 +1.5 5,708,849 + AO356_25215 0.46 +0.3 5,708,850 - AO356_25215 0.46 -3.5 5,708,850 - AO356_25215 0.46 +1.2 5,708,912 + AO356_25215 0.54 -0.4 5,708,913 - AO356_25215 0.54 +1.1 5,708,913 - AO356_25215 0.54 -0.5 5,708,960 + AO356_25215 0.61 +1.4 5,709,282 + +0.4 5,709,282 + -0.8 5,709,288 + -0.4 5,709,288 + -0.3 5,709,289 - -0.0 5,709,345 + AO356_25220 0.14 +0.6 5,709,345 + AO356_25220 0.14 -0.8 5,709,345 + AO356_25220 0.14 -2.6 5,709,478 - AO356_25220 0.34 +0.1 5,709,478 - AO356_25220 0.34 -0.1
Or see this region's nucleotide sequence