Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25005 and AO356_25010 are separated by 90 nucleotides AO356_25010 and AO356_25015 overlap by 4 nucleotides
AO356_25005: AO356_25005 - LysR family transcriptional regulator, at 5,664,679 to 5,665,575
_25005
AO356_25010: AO356_25010 - MFS transporter, at 5,665,666 to 5,667,081
_25010
AO356_25015: AO356_25015 - glucarate dehydratase, at 5,667,078 to 5,668,352
_25015
Position (kb)
5665
5666
5667
5668 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5664.726 kb on + strand at 5664.727 kb on - strand at 5664.992 kb on + strand, within AO356_25005 at 5664.993 kb on - strand, within AO356_25005 at 5665.110 kb on - strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.185 kb on - strand, within AO356_25005 at 5665.185 kb on - strand, within AO356_25005 at 5665.689 kb on + strand at 5665.694 kb on + strand at 5665.695 kb on - strand at 5665.754 kb on + strand at 5665.755 kb on - strand at 5665.789 kb on + strand at 5665.789 kb on + strand at 5665.789 kb on + strand at 5665.790 kb on - strand at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.027 kb on - strand, within AO356_25010 at 5666.027 kb on - strand, within AO356_25010 at 5666.083 kb on + strand, within AO356_25010 at 5666.084 kb on - strand, within AO356_25010 at 5666.084 kb on - strand, within AO356_25010 at 5666.084 kb on - strand, within AO356_25010 at 5666.086 kb on + strand, within AO356_25010 at 5666.087 kb on - strand, within AO356_25010 at 5666.455 kb on + strand, within AO356_25010 at 5666.455 kb on + strand, within AO356_25010 at 5666.456 kb on - strand, within AO356_25010 at 5666.479 kb on + strand, within AO356_25010 at 5666.480 kb on - strand, within AO356_25010 at 5666.480 kb on - strand, within AO356_25010 at 5666.908 kb on + strand, within AO356_25010 at 5666.909 kb on - strand, within AO356_25010 at 5667.077 kb on + strand at 5667.078 kb on - strand at 5667.078 kb on - strand at 5667.078 kb on - strand at 5667.201 kb on + strand at 5667.201 kb on + strand at 5667.201 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.222 kb on + strand, within AO356_25015 at 5667.222 kb on + strand, within AO356_25015 at 5667.408 kb on + strand, within AO356_25015 at 5667.450 kb on + strand, within AO356_25015 at 5667.451 kb on - strand, within AO356_25015 at 5667.517 kb on - strand, within AO356_25015 at 5667.531 kb on + strand, within AO356_25015 at 5667.531 kb on + strand, within AO356_25015 at 5667.532 kb on - strand, within AO356_25015 at 5667.807 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.811 kb on - strand, within AO356_25015 at 5667.884 kb on + strand, within AO356_25015 at 5667.885 kb on - strand, within AO356_25015
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,664,726 + +1.4 5,664,727 - +0.1 5,664,992 + AO356_25005 0.35 -0.2 5,664,993 - AO356_25005 0.35 -1.0 5,665,110 - AO356_25005 0.48 -0.9 5,665,184 + AO356_25005 0.56 +0.2 5,665,184 + AO356_25005 0.56 -0.0 5,665,184 + AO356_25005 0.56 -0.5 5,665,184 + AO356_25005 0.56 +0.6 5,665,185 - AO356_25005 0.56 -0.8 5,665,185 - AO356_25005 0.56 -0.3 5,665,689 + -0.8 5,665,694 + +0.0 5,665,695 - -0.3 5,665,754 + +0.4 5,665,755 - +1.4 5,665,789 + +0.1 5,665,789 + +0.7 5,665,789 + -0.1 5,665,790 - -0.6 5,666,026 + AO356_25010 0.25 -0.1 5,666,026 + AO356_25010 0.25 +0.3 5,666,026 + AO356_25010 0.25 -0.2 5,666,026 + AO356_25010 0.25 +1.1 5,666,026 + AO356_25010 0.25 -0.2 5,666,027 - AO356_25010 0.25 +0.7 5,666,027 - AO356_25010 0.25 +2.3 5,666,083 + AO356_25010 0.29 -1.2 5,666,084 - AO356_25010 0.30 +1.5 5,666,084 - AO356_25010 0.30 +1.1 5,666,084 - AO356_25010 0.30 +0.2 5,666,086 + AO356_25010 0.30 -0.9 5,666,087 - AO356_25010 0.30 +0.3 5,666,455 + AO356_25010 0.56 +0.2 5,666,455 + AO356_25010 0.56 +1.3 5,666,456 - AO356_25010 0.56 +0.5 5,666,479 + AO356_25010 0.57 -0.3 5,666,480 - AO356_25010 0.57 +0.8 5,666,480 - AO356_25010 0.57 -0.1 5,666,908 + AO356_25010 0.88 +1.1 5,666,909 - AO356_25010 0.88 +1.0 5,667,077 + -0.6 5,667,078 - -1.7 5,667,078 - -0.1 5,667,078 - +0.6 5,667,201 + +0.2 5,667,201 + +0.9 5,667,201 + -0.3 5,667,205 + +1.1 5,667,205 + -0.4 5,667,205 + -1.5 5,667,205 + -1.3 5,667,205 + +0.3 5,667,205 + -1.8 5,667,205 + +1.6 5,667,205 + +1.5 5,667,206 - AO356_25015 0.10 -0.3 5,667,206 - AO356_25015 0.10 -0.1 5,667,206 - AO356_25015 0.10 +0.8 5,667,206 - AO356_25015 0.10 +1.4 5,667,206 - AO356_25015 0.10 +1.5 5,667,222 + AO356_25015 0.11 +0.2 5,667,222 + AO356_25015 0.11 +0.2 5,667,408 + AO356_25015 0.26 -0.9 5,667,450 + AO356_25015 0.29 +0.6 5,667,451 - AO356_25015 0.29 +0.2 5,667,517 - AO356_25015 0.34 +0.9 5,667,531 + AO356_25015 0.36 +0.7 5,667,531 + AO356_25015 0.36 -0.3 5,667,532 - AO356_25015 0.36 +1.0 5,667,807 + AO356_25015 0.57 -0.0 5,667,810 + AO356_25015 0.57 +0.9 5,667,810 + AO356_25015 0.57 -0.4 5,667,810 + AO356_25015 0.57 +0.1 5,667,810 + AO356_25015 0.57 -0.6 5,667,811 - AO356_25015 0.57 -0.8 5,667,884 + AO356_25015 0.63 +0.9 5,667,885 - AO356_25015 0.63 +0.4
Or see this region's nucleotide sequence