Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25000

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24995 and AO356_25000 are separated by 51 nucleotidesAO356_25000 and AO356_25005 are separated by 320 nucleotides AO356_24995: AO356_24995 - LysR family transcriptional regulator, at 5,662,949 to 5,663,872 _24995 AO356_25000: AO356_25000 - hypothetical protein, at 5,663,924 to 5,664,358 _25000 AO356_25005: AO356_25005 - LysR family transcriptional regulator, at 5,664,679 to 5,665,575 _25005 Position (kb) 5663 5664 5665Strain fitness (log2 ratio) -2 -1 0 1 2at 5662.986 kb on + strandat 5662.986 kb on + strandat 5662.986 kb on + strandat 5662.986 kb on + strandat 5662.986 kb on + strandat 5662.986 kb on + strandat 5662.987 kb on - strandat 5662.987 kb on - strandat 5662.987 kb on - strandat 5662.987 kb on - strandat 5662.987 kb on - strandat 5663.159 kb on + strand, within AO356_24995at 5663.160 kb on - strand, within AO356_24995at 5663.270 kb on + strand, within AO356_24995at 5663.477 kb on + strand, within AO356_24995at 5663.477 kb on + strand, within AO356_24995at 5663.624 kb on + strand, within AO356_24995at 5663.694 kb on - strand, within AO356_24995at 5663.742 kb on + strand, within AO356_24995at 5663.742 kb on + strand, within AO356_24995at 5663.742 kb on + strand, within AO356_24995at 5663.743 kb on - strand, within AO356_24995at 5663.743 kb on - strand, within AO356_24995at 5663.777 kb on - strand, within AO356_24995at 5663.786 kb on + strandat 5663.787 kb on - strandat 5664.186 kb on + strand, within AO356_25000at 5664.186 kb on + strand, within AO356_25000at 5664.187 kb on - strand, within AO356_25000at 5664.187 kb on - strand, within AO356_25000at 5664.187 kb on - strand, within AO356_25000at 5664.233 kb on - strand, within AO356_25000at 5664.310 kb on - strand, within AO356_25000at 5664.379 kb on - strandat 5664.379 kb on - strandat 5664.379 kb on - strandat 5664.393 kb on + strandat 5664.394 kb on - strandat 5664.726 kb on + strandat 5664.727 kb on - strandat 5664.992 kb on + strand, within AO356_25005at 5664.993 kb on - strand, within AO356_25005at 5665.110 kb on - strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.185 kb on - strand, within AO356_25005at 5665.185 kb on - strand, within AO356_25005

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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5,662,986 + +0.2
5,662,986 + -2.1
5,662,986 + -0.0
5,662,986 + -0.5
5,662,986 + +1.0
5,662,986 + +0.9
5,662,987 - -0.4
5,662,987 - -0.5
5,662,987 - -1.6
5,662,987 - +0.9
5,662,987 - -0.3
5,663,159 + AO356_24995 0.23 +0.3
5,663,160 - AO356_24995 0.23 +0.5
5,663,270 + AO356_24995 0.35 -0.2
5,663,477 + AO356_24995 0.57 -0.6
5,663,477 + AO356_24995 0.57 -0.1
5,663,624 + AO356_24995 0.73 +0.6
5,663,694 - AO356_24995 0.81 +1.3
5,663,742 + AO356_24995 0.86 +1.5
5,663,742 + AO356_24995 0.86 +1.5
5,663,742 + AO356_24995 0.86 +0.5
5,663,743 - AO356_24995 0.86 +0.4
5,663,743 - AO356_24995 0.86 +1.6
5,663,777 - AO356_24995 0.90 +0.6
5,663,786 + -0.2
5,663,787 - +1.4
5,664,186 + AO356_25000 0.60 +0.5
5,664,186 + AO356_25000 0.60 +0.1
5,664,187 - AO356_25000 0.60 +0.1
5,664,187 - AO356_25000 0.60 +0.2
5,664,187 - AO356_25000 0.60 -0.7
5,664,233 - AO356_25000 0.71 -0.9
5,664,310 - AO356_25000 0.89 +0.2
5,664,379 - -0.4
5,664,379 - +2.1
5,664,379 - -0.6
5,664,393 + +1.6
5,664,394 - +0.2
5,664,726 + +1.4
5,664,727 - +0.1
5,664,992 + AO356_25005 0.35 -0.2
5,664,993 - AO356_25005 0.35 -1.0
5,665,110 - AO356_25005 0.48 -0.9
5,665,184 + AO356_25005 0.56 +0.2
5,665,184 + AO356_25005 0.56 -0.0
5,665,184 + AO356_25005 0.56 -0.5
5,665,184 + AO356_25005 0.56 +0.6
5,665,185 - AO356_25005 0.56 -0.8
5,665,185 - AO356_25005 0.56 -0.3

Or see this region's nucleotide sequence