Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24985 and AO356_24990 are separated by 312 nucleotides AO356_24990 and AO356_24995 are separated by 128 nucleotides AO356_24995 and AO356_25000 are separated by 51 nucleotides AO356_25000 and AO356_25005 are separated by 320 nucleotides
AO356_24985: AO356_24985 - 3-oxoacyl-ACP reductase, at 5,661,567 to 5,662,301
_24985
AO356_24990: AO356_24990 - 4-oxalocrotonate tautomerase, at 5,662,614 to 5,662,820
_24990
AO356_24995: AO356_24995 - LysR family transcriptional regulator, at 5,662,949 to 5,663,872
_24995
AO356_25000: AO356_25000 - hypothetical protein, at 5,663,924 to 5,664,358
_25000
AO356_25005: AO356_25005 - LysR family transcriptional regulator, at 5,664,679 to 5,665,575
_25005
Position (kb)
5662
5663
5664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5661.953 kb on - strand, within AO356_24985 at 5661.953 kb on - strand, within AO356_24985 at 5662.214 kb on + strand, within AO356_24985 at 5662.214 kb on + strand, within AO356_24985 at 5662.215 kb on - strand, within AO356_24985 at 5662.215 kb on - strand, within AO356_24985 at 5662.216 kb on + strand, within AO356_24985 at 5662.217 kb on - strand, within AO356_24985 at 5662.217 kb on - strand, within AO356_24985 at 5662.217 kb on - strand, within AO356_24985 at 5662.217 kb on - strand, within AO356_24985 at 5662.421 kb on + strand at 5662.615 kb on + strand at 5662.616 kb on - strand at 5662.670 kb on + strand, within AO356_24990 at 5662.670 kb on + strand, within AO356_24990 at 5662.882 kb on + strand at 5662.882 kb on + strand at 5662.882 kb on + strand at 5662.882 kb on + strand at 5662.882 kb on + strand at 5662.883 kb on - strand at 5662.883 kb on - strand at 5662.886 kb on + strand at 5662.887 kb on - strand at 5662.889 kb on - strand at 5662.986 kb on + strand at 5662.986 kb on + strand at 5662.986 kb on + strand at 5662.986 kb on + strand at 5662.986 kb on + strand at 5662.986 kb on + strand at 5662.987 kb on - strand at 5662.987 kb on - strand at 5662.987 kb on - strand at 5662.987 kb on - strand at 5662.987 kb on - strand at 5663.159 kb on + strand, within AO356_24995 at 5663.160 kb on - strand, within AO356_24995 at 5663.270 kb on + strand, within AO356_24995 at 5663.477 kb on + strand, within AO356_24995 at 5663.477 kb on + strand, within AO356_24995 at 5663.624 kb on + strand, within AO356_24995 at 5663.694 kb on - strand, within AO356_24995 at 5663.742 kb on + strand, within AO356_24995 at 5663.742 kb on + strand, within AO356_24995 at 5663.742 kb on + strand, within AO356_24995 at 5663.743 kb on - strand, within AO356_24995 at 5663.743 kb on - strand, within AO356_24995 at 5663.777 kb on - strand, within AO356_24995 at 5663.786 kb on + strand at 5663.787 kb on - strand at 5664.186 kb on + strand, within AO356_25000 at 5664.186 kb on + strand, within AO356_25000 at 5664.187 kb on - strand, within AO356_25000 at 5664.187 kb on - strand, within AO356_25000 at 5664.187 kb on - strand, within AO356_25000 at 5664.233 kb on - strand, within AO356_25000 at 5664.310 kb on - strand, within AO356_25000 at 5664.379 kb on - strand at 5664.379 kb on - strand at 5664.379 kb on - strand at 5664.393 kb on + strand at 5664.394 kb on - strand at 5664.726 kb on + strand at 5664.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,661,953 - AO356_24985 0.53 +1.4 5,661,953 - AO356_24985 0.53 +0.6 5,662,214 + AO356_24985 0.88 +0.4 5,662,214 + AO356_24985 0.88 -1.9 5,662,215 - AO356_24985 0.88 -0.0 5,662,215 - AO356_24985 0.88 +0.8 5,662,216 + AO356_24985 0.88 -0.7 5,662,217 - AO356_24985 0.88 -0.1 5,662,217 - AO356_24985 0.88 -0.4 5,662,217 - AO356_24985 0.88 -0.5 5,662,217 - AO356_24985 0.88 +0.1 5,662,421 + +0.4 5,662,615 + -0.3 5,662,616 - -0.9 5,662,670 + AO356_24990 0.27 -0.0 5,662,670 + AO356_24990 0.27 +0.3 5,662,882 + -0.5 5,662,882 + -0.2 5,662,882 + -0.6 5,662,882 + -0.2 5,662,882 + +0.8 5,662,883 - -0.3 5,662,883 - +0.5 5,662,886 + +0.8 5,662,887 - -0.4 5,662,889 - -0.1 5,662,986 + +0.2 5,662,986 + -2.1 5,662,986 + -0.0 5,662,986 + -0.5 5,662,986 + +1.0 5,662,986 + +0.9 5,662,987 - -0.4 5,662,987 - -0.5 5,662,987 - -1.6 5,662,987 - +0.9 5,662,987 - -0.3 5,663,159 + AO356_24995 0.23 +0.3 5,663,160 - AO356_24995 0.23 +0.5 5,663,270 + AO356_24995 0.35 -0.2 5,663,477 + AO356_24995 0.57 -0.6 5,663,477 + AO356_24995 0.57 -0.1 5,663,624 + AO356_24995 0.73 +0.6 5,663,694 - AO356_24995 0.81 +1.3 5,663,742 + AO356_24995 0.86 +1.5 5,663,742 + AO356_24995 0.86 +1.5 5,663,742 + AO356_24995 0.86 +0.5 5,663,743 - AO356_24995 0.86 +0.4 5,663,743 - AO356_24995 0.86 +1.6 5,663,777 - AO356_24995 0.90 +0.6 5,663,786 + -0.2 5,663,787 - +1.4 5,664,186 + AO356_25000 0.60 +0.5 5,664,186 + AO356_25000 0.60 +0.1 5,664,187 - AO356_25000 0.60 +0.1 5,664,187 - AO356_25000 0.60 +0.2 5,664,187 - AO356_25000 0.60 -0.7 5,664,233 - AO356_25000 0.71 -0.9 5,664,310 - AO356_25000 0.89 +0.2 5,664,379 - -0.4 5,664,379 - +2.1 5,664,379 - -0.6 5,664,393 + +1.6 5,664,394 - +0.2 5,664,726 + +1.4 5,664,727 - +0.1
Or see this region's nucleotide sequence