Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24485 and AO356_24490 are separated by 88 nucleotides AO356_24490 and AO356_24495 are separated by 235 nucleotides AO356_24495 and AO356_24500 are separated by 268 nucleotides AO356_24500 and AO356_24505 overlap by 35 nucleotides
AO356_24485: AO356_24485 - SAM-dependent methyltransferase, at 5,529,769 to 5,530,527
_24485
AO356_24490: AO356_24490 - ribonuclease H, at 5,530,616 to 5,531,068
_24490
AO356_24495: AO356_24495 - DNA polymerase III subunit epsilon, at 5,531,304 to 5,532,065
_24495
AO356_24500: AO356_24500 - GNAT family acetyltransferase, at 5,532,334 to 5,532,948
_24500
AO356_24505: AO356_24505 - LysR family transcriptional regulator, at 5,532,914 to 5,533,807
_24505
Position (kb) 5531
5532
5533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5530.402 kb on + strand, within AO356_24485 at 5530.403 kb on - strand, within AO356_24485 at 5530.525 kb on + strand at 5530.526 kb on - strand at 5530.535 kb on + strand at 5530.561 kb on - strand at 5530.629 kb on + strand at 5530.629 kb on + strand at 5530.629 kb on + strand at 5531.209 kb on + strand at 5531.258 kb on + strand at 5532.334 kb on - strand at 5532.404 kb on - strand, within AO356_24500 at 5532.404 kb on - strand, within AO356_24500 at 5532.404 kb on - strand, within AO356_24500 at 5532.404 kb on - strand, within AO356_24500 at 5532.404 kb on - strand, within AO356_24500 at 5532.580 kb on + strand, within AO356_24500 at 5532.581 kb on - strand, within AO356_24500 at 5532.581 kb on - strand, within AO356_24500 at 5532.635 kb on - strand, within AO356_24500 at 5532.790 kb on + strand, within AO356_24500 at 5532.790 kb on + strand, within AO356_24500 at 5532.806 kb on - strand, within AO356_24500 at 5532.806 kb on - strand, within AO356_24500 at 5532.820 kb on - strand, within AO356_24500 at 5532.946 kb on + strand at 5532.947 kb on - strand at 5533.008 kb on + strand, within AO356_24505 at 5533.009 kb on - strand, within AO356_24505
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,530,402 + AO356_24485 0.83 -0.2 5,530,403 - AO356_24485 0.84 +1.1 5,530,525 + +1.4 5,530,526 - -0.7 5,530,535 + +0.1 5,530,561 - -0.0 5,530,629 + -0.9 5,530,629 + -1.5 5,530,629 + +0.3 5,531,209 + -0.3 5,531,258 + +1.5 5,532,334 - +0.6 5,532,404 - AO356_24500 0.11 +0.8 5,532,404 - AO356_24500 0.11 +1.3 5,532,404 - AO356_24500 0.11 +0.1 5,532,404 - AO356_24500 0.11 +1.8 5,532,404 - AO356_24500 0.11 +0.7 5,532,580 + AO356_24500 0.40 +1.0 5,532,581 - AO356_24500 0.40 +1.0 5,532,581 - AO356_24500 0.40 -2.5 5,532,635 - AO356_24500 0.49 +0.5 5,532,790 + AO356_24500 0.74 +0.7 5,532,790 + AO356_24500 0.74 -0.2 5,532,806 - AO356_24500 0.77 -3.6 5,532,806 - AO356_24500 0.77 +1.2 5,532,820 - AO356_24500 0.79 +1.2 5,532,946 + +0.9 5,532,947 - +1.0 5,533,008 + AO356_24505 0.11 +1.0 5,533,009 - AO356_24505 0.11 +1.3
Or see this region's nucleotide sequence