Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23570 and AO356_23575 are separated by 2 nucleotides AO356_23575 and AO356_23580 are separated by 444 nucleotides
AO356_23570: AO356_23570 - hemolysin secretion protein D, at 5,285,386 to 5,286,699
_23570
AO356_23575: AO356_23575 - channel protein TolC, at 5,286,702 to 5,288,075
_23575
AO356_23580: AO356_23580 - LuxR family transcriptional regulator, at 5,288,520 to 5,289,239
_23580
Position (kb)
5286
5287
5288
5289 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5285.831 kb on + strand, within AO356_23570 at 5285.960 kb on - strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.485 kb on + strand, within AO356_23570 at 5286.485 kb on + strand, within AO356_23570 at 5286.486 kb on - strand, within AO356_23570 at 5286.526 kb on + strand, within AO356_23570 at 5286.527 kb on - strand, within AO356_23570 at 5286.529 kb on + strand, within AO356_23570 at 5286.530 kb on - strand, within AO356_23570 at 5286.619 kb on - strand at 5286.646 kb on + strand at 5286.647 kb on - strand at 5286.725 kb on - strand at 5286.821 kb on + strand at 5286.822 kb on - strand at 5286.832 kb on - strand at 5286.862 kb on + strand, within AO356_23575 at 5286.863 kb on - strand, within AO356_23575 at 5286.873 kb on + strand, within AO356_23575 at 5287.011 kb on + strand, within AO356_23575 at 5287.012 kb on - strand, within AO356_23575 at 5287.032 kb on + strand, within AO356_23575 at 5287.038 kb on + strand, within AO356_23575 at 5287.039 kb on - strand, within AO356_23575 at 5287.039 kb on - strand, within AO356_23575 at 5287.040 kb on + strand, within AO356_23575 at 5287.040 kb on + strand, within AO356_23575 at 5287.062 kb on + strand, within AO356_23575 at 5287.062 kb on + strand, within AO356_23575 at 5287.063 kb on - strand, within AO356_23575 at 5287.063 kb on - strand, within AO356_23575 at 5287.149 kb on + strand, within AO356_23575 at 5287.150 kb on - strand, within AO356_23575 at 5287.242 kb on + strand, within AO356_23575 at 5287.242 kb on + strand, within AO356_23575 at 5287.242 kb on + strand, within AO356_23575 at 5287.243 kb on - strand, within AO356_23575 at 5287.243 kb on - strand, within AO356_23575 at 5287.243 kb on - strand, within AO356_23575 at 5287.596 kb on + strand, within AO356_23575 at 5287.597 kb on - strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.630 kb on - strand, within AO356_23575 at 5287.630 kb on - strand, within AO356_23575 at 5287.701 kb on + strand, within AO356_23575 at 5287.701 kb on + strand, within AO356_23575 at 5287.702 kb on - strand, within AO356_23575 at 5287.777 kb on - strand, within AO356_23575 at 5287.843 kb on + strand, within AO356_23575 at 5287.843 kb on + strand, within AO356_23575 at 5287.957 kb on - strand at 5288.041 kb on + strand at 5288.096 kb on + strand at 5288.164 kb on - strand at 5288.353 kb on - strand at 5288.363 kb on + strand at 5288.363 kb on + strand at 5288.363 kb on + strand at 5288.364 kb on - strand at 5288.385 kb on + strand at 5288.385 kb on + strand at 5288.386 kb on - strand at 5288.386 kb on - strand at 5288.386 kb on - strand at 5288.386 kb on - strand at 5288.386 kb on - strand at 5288.410 kb on - strand at 5288.519 kb on + strand at 5288.649 kb on + strand, within AO356_23580 at 5288.649 kb on + strand, within AO356_23580 at 5288.649 kb on + strand, within AO356_23580 at 5288.650 kb on - strand, within AO356_23580 at 5288.650 kb on - strand, within AO356_23580 at 5288.650 kb on - strand, within AO356_23580 at 5288.650 kb on - strand, within AO356_23580 at 5288.651 kb on + strand, within AO356_23580 at 5288.652 kb on - strand, within AO356_23580 at 5288.793 kb on + strand, within AO356_23580 at 5288.793 kb on + strand, within AO356_23580 at 5288.793 kb on + strand, within AO356_23580 at 5288.794 kb on - strand, within AO356_23580 at 5288.794 kb on - strand, within AO356_23580 at 5288.794 kb on - strand, within AO356_23580 at 5289.063 kb on + strand, within AO356_23580 at 5289.063 kb on + strand, within AO356_23580 at 5289.064 kb on - strand, within AO356_23580
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,285,831 + AO356_23570 0.34 +1.0 5,285,960 - AO356_23570 0.44 +0.2 5,286,311 + AO356_23570 0.70 -1.3 5,286,311 + AO356_23570 0.70 +0.8 5,286,312 - AO356_23570 0.70 -0.2 5,286,312 - AO356_23570 0.70 -0.4 5,286,312 - AO356_23570 0.70 +0.8 5,286,312 - AO356_23570 0.70 +0.6 5,286,365 + AO356_23570 0.75 +0.2 5,286,365 + AO356_23570 0.75 -0.3 5,286,365 + AO356_23570 0.75 -0.9 5,286,366 - AO356_23570 0.75 -0.1 5,286,366 - AO356_23570 0.75 -0.2 5,286,366 - AO356_23570 0.75 +0.7 5,286,366 - AO356_23570 0.75 +0.8 5,286,366 - AO356_23570 0.75 +1.3 5,286,485 + AO356_23570 0.84 +1.4 5,286,485 + AO356_23570 0.84 +0.7 5,286,486 - AO356_23570 0.84 -0.3 5,286,526 + AO356_23570 0.87 -1.1 5,286,527 - AO356_23570 0.87 -0.6 5,286,529 + AO356_23570 0.87 +0.2 5,286,530 - AO356_23570 0.87 -2.4 5,286,619 - +1.8 5,286,646 + +0.2 5,286,647 - +1.5 5,286,725 - -0.0 5,286,821 + -1.4 5,286,822 - +0.7 5,286,832 - +0.2 5,286,862 + AO356_23575 0.12 +0.6 5,286,863 - AO356_23575 0.12 +1.1 5,286,873 + AO356_23575 0.12 -0.3 5,287,011 + AO356_23575 0.22 +0.4 5,287,012 - AO356_23575 0.23 +0.7 5,287,032 + AO356_23575 0.24 +0.2 5,287,038 + AO356_23575 0.24 -0.2 5,287,039 - AO356_23575 0.25 -1.5 5,287,039 - AO356_23575 0.25 +0.2 5,287,040 + AO356_23575 0.25 +0.7 5,287,040 + AO356_23575 0.25 +0.3 5,287,062 + AO356_23575 0.26 +0.9 5,287,062 + AO356_23575 0.26 -0.4 5,287,063 - AO356_23575 0.26 +0.4 5,287,063 - AO356_23575 0.26 -0.9 5,287,149 + AO356_23575 0.33 +0.6 5,287,150 - AO356_23575 0.33 +1.2 5,287,242 + AO356_23575 0.39 +1.1 5,287,242 + AO356_23575 0.39 +0.9 5,287,242 + AO356_23575 0.39 +0.4 5,287,243 - AO356_23575 0.39 -0.4 5,287,243 - AO356_23575 0.39 +1.7 5,287,243 - AO356_23575 0.39 -0.5 5,287,596 + AO356_23575 0.65 -0.3 5,287,597 - AO356_23575 0.65 +0.4 5,287,629 + AO356_23575 0.67 -0.3 5,287,629 + AO356_23575 0.67 -0.5 5,287,629 + AO356_23575 0.67 +0.8 5,287,629 + AO356_23575 0.67 -0.6 5,287,630 - AO356_23575 0.68 -1.5 5,287,630 - AO356_23575 0.68 +1.3 5,287,701 + AO356_23575 0.73 +0.6 5,287,701 + AO356_23575 0.73 +0.0 5,287,702 - AO356_23575 0.73 +1.8 5,287,777 - AO356_23575 0.78 -0.0 5,287,843 + AO356_23575 0.83 -0.2 5,287,843 + AO356_23575 0.83 +1.2 5,287,957 - -1.6 5,288,041 + -1.2 5,288,096 + -0.2 5,288,164 - -0.9 5,288,353 - -2.4 5,288,363 + +0.6 5,288,363 + -0.5 5,288,363 + +0.5 5,288,364 - +0.9 5,288,385 + -0.1 5,288,385 + +0.1 5,288,386 - -0.2 5,288,386 - +1.3 5,288,386 - +0.8 5,288,386 - -0.8 5,288,386 - +0.5 5,288,410 - +1.9 5,288,519 + +1.5 5,288,649 + AO356_23580 0.18 -0.3 5,288,649 + AO356_23580 0.18 -1.5 5,288,649 + AO356_23580 0.18 -1.8 5,288,650 - AO356_23580 0.18 -2.0 5,288,650 - AO356_23580 0.18 -1.5 5,288,650 - AO356_23580 0.18 +0.5 5,288,650 - AO356_23580 0.18 +0.6 5,288,651 + AO356_23580 0.18 +2.8 5,288,652 - AO356_23580 0.18 -0.0 5,288,793 + AO356_23580 0.38 +1.3 5,288,793 + AO356_23580 0.38 -0.5 5,288,793 + AO356_23580 0.38 +0.2 5,288,794 - AO356_23580 0.38 +1.0 5,288,794 - AO356_23580 0.38 +0.2 5,288,794 - AO356_23580 0.38 +1.5 5,289,063 + AO356_23580 0.75 -0.3 5,289,063 + AO356_23580 0.75 -1.2 5,289,064 - AO356_23580 0.76 -0.2
Or see this region's nucleotide sequence