Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23565 and AO356_23570 overlap by 20 nucleotides AO356_23570 and AO356_23575 are separated by 2 nucleotides
AO356_23565: AO356_23565 - peptidase, at 5,283,621 to 5,285,405
_23565
AO356_23570: AO356_23570 - hemolysin secretion protein D, at 5,285,386 to 5,286,699
_23570
AO356_23575: AO356_23575 - channel protein TolC, at 5,286,702 to 5,288,075
_23575
Position (kb)
5285
5286
5287 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5284.402 kb on - strand, within AO356_23565 at 5284.530 kb on + strand, within AO356_23565 at 5284.986 kb on + strand, within AO356_23565 at 5284.986 kb on + strand, within AO356_23565 at 5284.987 kb on - strand, within AO356_23565 at 5285.064 kb on + strand, within AO356_23565 at 5285.064 kb on + strand, within AO356_23565 at 5285.065 kb on - strand, within AO356_23565 at 5285.247 kb on - strand at 5285.831 kb on + strand, within AO356_23570 at 5285.960 kb on - strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.485 kb on + strand, within AO356_23570 at 5286.485 kb on + strand, within AO356_23570 at 5286.486 kb on - strand, within AO356_23570 at 5286.526 kb on + strand, within AO356_23570 at 5286.527 kb on - strand, within AO356_23570 at 5286.529 kb on + strand, within AO356_23570 at 5286.530 kb on - strand, within AO356_23570 at 5286.619 kb on - strand at 5286.646 kb on + strand at 5286.647 kb on - strand at 5286.725 kb on - strand at 5286.821 kb on + strand at 5286.822 kb on - strand at 5286.832 kb on - strand at 5286.862 kb on + strand, within AO356_23575 at 5286.863 kb on - strand, within AO356_23575 at 5286.873 kb on + strand, within AO356_23575 at 5287.011 kb on + strand, within AO356_23575 at 5287.012 kb on - strand, within AO356_23575 at 5287.032 kb on + strand, within AO356_23575 at 5287.038 kb on + strand, within AO356_23575 at 5287.039 kb on - strand, within AO356_23575 at 5287.039 kb on - strand, within AO356_23575 at 5287.040 kb on + strand, within AO356_23575 at 5287.040 kb on + strand, within AO356_23575 at 5287.062 kb on + strand, within AO356_23575 at 5287.062 kb on + strand, within AO356_23575 at 5287.063 kb on - strand, within AO356_23575 at 5287.063 kb on - strand, within AO356_23575 at 5287.149 kb on + strand, within AO356_23575 at 5287.150 kb on - strand, within AO356_23575 at 5287.242 kb on + strand, within AO356_23575 at 5287.242 kb on + strand, within AO356_23575 at 5287.242 kb on + strand, within AO356_23575 at 5287.243 kb on - strand, within AO356_23575 at 5287.243 kb on - strand, within AO356_23575 at 5287.243 kb on - strand, within AO356_23575 at 5287.596 kb on + strand, within AO356_23575 at 5287.597 kb on - strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.629 kb on + strand, within AO356_23575 at 5287.630 kb on - strand, within AO356_23575 at 5287.630 kb on - strand, within AO356_23575
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,284,402 - AO356_23565 0.44 +0.2 5,284,530 + AO356_23565 0.51 -0.1 5,284,986 + AO356_23565 0.76 -2.0 5,284,986 + AO356_23565 0.76 -0.6 5,284,987 - AO356_23565 0.77 -0.8 5,285,064 + AO356_23565 0.81 -0.4 5,285,064 + AO356_23565 0.81 -0.7 5,285,065 - AO356_23565 0.81 +0.2 5,285,247 - +0.1 5,285,831 + AO356_23570 0.34 +1.0 5,285,960 - AO356_23570 0.44 +0.2 5,286,311 + AO356_23570 0.70 -1.3 5,286,311 + AO356_23570 0.70 +0.8 5,286,312 - AO356_23570 0.70 -0.2 5,286,312 - AO356_23570 0.70 -0.4 5,286,312 - AO356_23570 0.70 +0.8 5,286,312 - AO356_23570 0.70 +0.6 5,286,365 + AO356_23570 0.75 +0.2 5,286,365 + AO356_23570 0.75 -0.3 5,286,365 + AO356_23570 0.75 -0.9 5,286,366 - AO356_23570 0.75 -0.1 5,286,366 - AO356_23570 0.75 -0.2 5,286,366 - AO356_23570 0.75 +0.7 5,286,366 - AO356_23570 0.75 +0.8 5,286,366 - AO356_23570 0.75 +1.3 5,286,485 + AO356_23570 0.84 +1.4 5,286,485 + AO356_23570 0.84 +0.7 5,286,486 - AO356_23570 0.84 -0.3 5,286,526 + AO356_23570 0.87 -1.1 5,286,527 - AO356_23570 0.87 -0.6 5,286,529 + AO356_23570 0.87 +0.2 5,286,530 - AO356_23570 0.87 -2.4 5,286,619 - +1.8 5,286,646 + +0.2 5,286,647 - +1.5 5,286,725 - -0.0 5,286,821 + -1.4 5,286,822 - +0.7 5,286,832 - +0.2 5,286,862 + AO356_23575 0.12 +0.6 5,286,863 - AO356_23575 0.12 +1.1 5,286,873 + AO356_23575 0.12 -0.3 5,287,011 + AO356_23575 0.22 +0.4 5,287,012 - AO356_23575 0.23 +0.7 5,287,032 + AO356_23575 0.24 +0.2 5,287,038 + AO356_23575 0.24 -0.2 5,287,039 - AO356_23575 0.25 -1.5 5,287,039 - AO356_23575 0.25 +0.2 5,287,040 + AO356_23575 0.25 +0.7 5,287,040 + AO356_23575 0.25 +0.3 5,287,062 + AO356_23575 0.26 +0.9 5,287,062 + AO356_23575 0.26 -0.4 5,287,063 - AO356_23575 0.26 +0.4 5,287,063 - AO356_23575 0.26 -0.9 5,287,149 + AO356_23575 0.33 +0.6 5,287,150 - AO356_23575 0.33 +1.2 5,287,242 + AO356_23575 0.39 +1.1 5,287,242 + AO356_23575 0.39 +0.9 5,287,242 + AO356_23575 0.39 +0.4 5,287,243 - AO356_23575 0.39 -0.4 5,287,243 - AO356_23575 0.39 +1.7 5,287,243 - AO356_23575 0.39 -0.5 5,287,596 + AO356_23575 0.65 -0.3 5,287,597 - AO356_23575 0.65 +0.4 5,287,629 + AO356_23575 0.67 -0.3 5,287,629 + AO356_23575 0.67 -0.5 5,287,629 + AO356_23575 0.67 +0.8 5,287,629 + AO356_23575 0.67 -0.6 5,287,630 - AO356_23575 0.68 -1.5 5,287,630 - AO356_23575 0.68 +1.3
Or see this region's nucleotide sequence