Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22930 and AO356_22935 are separated by 251 nucleotides AO356_22935 and AO356_22940 are separated by 4 nucleotides AO356_22940 and AO356_22945 overlap by 1 nucleotides
AO356_22930: AO356_22930 - DNA alkylation repair protein, at 5,121,280 to 5,122,383
_22930
AO356_22935: AO356_22935 - hypothetical protein, at 5,122,635 to 5,122,943
_22935
AO356_22940: AO356_22940 - hypothetical protein, at 5,122,948 to 5,123,271
_22940
AO356_22945: AO356_22945 - peptidase M4, at 5,123,271 to 5,124,332
_22945
Position (kb) 5122
5123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5122.040 kb on + strand, within AO356_22930 at 5122.041 kb on - strand, within AO356_22930 at 5122.083 kb on - strand, within AO356_22930 at 5122.094 kb on + strand, within AO356_22930 at 5122.173 kb on - strand, within AO356_22930 at 5122.413 kb on + strand at 5122.413 kb on + strand at 5122.413 kb on + strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.414 kb on - strand at 5122.416 kb on - strand at 5122.572 kb on - strand at 5122.635 kb on - strand at 5122.635 kb on - strand at 5122.792 kb on - strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.884 kb on + strand, within AO356_22935 at 5122.885 kb on - strand, within AO356_22935 at 5122.941 kb on + strand at 5122.942 kb on - strand at 5122.942 kb on - strand at 5122.942 kb on - strand at 5123.431 kb on + strand, within AO356_22945 at 5123.432 kb on - strand, within AO356_22945 at 5123.432 kb on - strand, within AO356_22945 at 5123.489 kb on - strand, within AO356_22945 at 5123.489 kb on - strand, within AO356_22945 at 5123.605 kb on + strand, within AO356_22945 at 5123.605 kb on + strand, within AO356_22945 at 5123.606 kb on - strand, within AO356_22945 at 5123.889 kb on + strand, within AO356_22945 at 5123.890 kb on - strand, within AO356_22945 at 5123.890 kb on - strand, within AO356_22945 at 5123.890 kb on - strand, within AO356_22945 at 5123.924 kb on - strand, within AO356_22945
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,121,673 - AO356_22930 0.36 -1.0 5,121,673 - AO356_22930 0.36 -0.2 5,121,673 - AO356_22930 0.36 +0.2 5,121,803 + AO356_22930 0.47 +0.6 5,121,803 + AO356_22930 0.47 +0.5 5,121,803 + AO356_22930 0.47 -1.0 5,121,803 + AO356_22930 0.47 +0.5 5,121,804 - AO356_22930 0.47 +0.9 5,121,804 - AO356_22930 0.47 +0.8 5,122,040 + AO356_22930 0.69 +1.4 5,122,041 - AO356_22930 0.69 -0.2 5,122,083 - AO356_22930 0.73 +0.1 5,122,094 + AO356_22930 0.74 +0.9 5,122,173 - AO356_22930 0.81 +0.3 5,122,413 + +0.8 5,122,413 + -0.3 5,122,413 + -0.7 5,122,414 - +0.6 5,122,414 - +0.8 5,122,414 - -0.9 5,122,414 - -0.4 5,122,414 - +1.1 5,122,414 - -1.0 5,122,414 - -0.1 5,122,414 - +0.4 5,122,414 - -0.3 5,122,414 - +0.9 5,122,416 - +1.0 5,122,572 - -1.6 5,122,635 - -0.6 5,122,635 - -0.1 5,122,792 - AO356_22935 0.51 -1.6 5,122,884 + AO356_22935 0.81 -1.7 5,122,884 + AO356_22935 0.81 +1.1 5,122,884 + AO356_22935 0.81 -1.9 5,122,885 - AO356_22935 0.81 -1.4 5,122,941 + -0.7 5,122,942 - -0.2 5,122,942 - -1.1 5,122,942 - -0.6 5,123,431 + AO356_22945 0.15 +0.2 5,123,432 - AO356_22945 0.15 -2.5 5,123,432 - AO356_22945 0.15 -0.2 5,123,489 - AO356_22945 0.21 -2.2 5,123,489 - AO356_22945 0.21 -0.1 5,123,605 + AO356_22945 0.31 +0.1 5,123,605 + AO356_22945 0.31 +1.1 5,123,606 - AO356_22945 0.32 -0.0 5,123,889 + AO356_22945 0.58 +0.1 5,123,890 - AO356_22945 0.58 +1.3 5,123,890 - AO356_22945 0.58 +2.0 5,123,890 - AO356_22945 0.58 +0.4 5,123,924 - AO356_22945 0.61 +0.6
Or see this region's nucleotide sequence