Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22880 and AO356_22885 are separated by 371 nucleotides AO356_22885 and AO356_22890 are separated by 95 nucleotides
AO356_22880: AO356_22880 - aspartate aminotransferase, at 5,107,242 to 5,108,429
_22880
AO356_22885: AO356_22885 - hypothetical protein, at 5,108,801 to 5,109,604
_22885
AO356_22890: AO356_22890 - hypothetical protein, at 5,109,700 to 5,111,709
_22890
Position (kb)
5108
5109
5110 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5107.860 kb on + strand, within AO356_22880 at 5107.860 kb on + strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.861 kb on - strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.875 kb on + strand, within AO356_22880 at 5107.876 kb on - strand, within AO356_22880 at 5107.876 kb on - strand, within AO356_22880 at 5108.277 kb on + strand, within AO356_22880 at 5108.331 kb on - strand at 5108.472 kb on + strand at 5108.473 kb on - strand at 5108.476 kb on + strand at 5108.476 kb on + strand at 5108.477 kb on - strand at 5108.477 kb on - strand at 5108.477 kb on - strand at 5108.513 kb on + strand at 5108.524 kb on - strand at 5108.547 kb on + strand at 5108.569 kb on - strand at 5108.624 kb on + strand at 5108.625 kb on - strand at 5108.796 kb on + strand at 5108.796 kb on + strand at 5108.796 kb on + strand at 5108.797 kb on - strand at 5108.800 kb on + strand at 5108.800 kb on + strand at 5108.801 kb on - strand at 5108.801 kb on - strand at 5108.881 kb on + strand at 5108.881 kb on + strand at 5108.882 kb on - strand, within AO356_22885 at 5109.013 kb on - strand, within AO356_22885 at 5109.015 kb on + strand, within AO356_22885 at 5109.016 kb on - strand, within AO356_22885 at 5109.016 kb on - strand, within AO356_22885 at 5109.057 kb on + strand, within AO356_22885 at 5109.057 kb on + strand, within AO356_22885 at 5109.061 kb on + strand, within AO356_22885 at 5109.062 kb on - strand, within AO356_22885 at 5109.146 kb on + strand, within AO356_22885 at 5109.175 kb on - strand, within AO356_22885 at 5109.231 kb on - strand, within AO356_22885 at 5109.324 kb on + strand, within AO356_22885 at 5109.565 kb on + strand at 5109.743 kb on + strand at 5109.863 kb on + strand at 5109.863 kb on + strand at 5109.868 kb on + strand at 5109.869 kb on - strand at 5109.869 kb on - strand at 5109.869 kb on - strand at 5109.977 kb on + strand, within AO356_22890 at 5109.985 kb on - strand, within AO356_22890 at 5110.030 kb on + strand, within AO356_22890 at 5110.031 kb on - strand, within AO356_22890 at 5110.084 kb on - strand, within AO356_22890 at 5110.087 kb on + strand, within AO356_22890 at 5110.104 kb on + strand, within AO356_22890 at 5110.132 kb on + strand, within AO356_22890 at 5110.133 kb on - strand, within AO356_22890 at 5110.158 kb on + strand, within AO356_22890 at 5110.246 kb on + strand, within AO356_22890 at 5110.247 kb on - strand, within AO356_22890 at 5110.390 kb on + strand, within AO356_22890 at 5110.391 kb on - strand, within AO356_22890 at 5110.454 kb on - strand, within AO356_22890 at 5110.454 kb on - strand, within AO356_22890 at 5110.457 kb on + strand, within AO356_22890 at 5110.458 kb on - strand, within AO356_22890 at 5110.477 kb on - strand, within AO356_22890 at 5110.477 kb on - strand, within AO356_22890 at 5110.505 kb on - strand, within AO356_22890 at 5110.522 kb on - strand, within AO356_22890 at 5110.522 kb on - strand, within AO356_22890
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 5,107,860 + AO356_22880 0.52 +1.3 5,107,860 + AO356_22880 0.52 -0.7 5,107,861 - AO356_22880 0.52 -0.0 5,107,861 - AO356_22880 0.52 -0.7 5,107,861 - AO356_22880 0.52 -0.2 5,107,861 - AO356_22880 0.52 +0.8 5,107,875 + AO356_22880 0.53 +0.4 5,107,875 + AO356_22880 0.53 +1.5 5,107,875 + AO356_22880 0.53 -0.1 5,107,875 + AO356_22880 0.53 +0.6 5,107,876 - AO356_22880 0.53 +0.6 5,107,876 - AO356_22880 0.53 +0.0 5,108,277 + AO356_22880 0.87 +0.9 5,108,331 - -0.2 5,108,472 + +1.8 5,108,473 - -0.1 5,108,476 + +1.3 5,108,476 + +0.0 5,108,477 - -0.9 5,108,477 - +0.1 5,108,477 - +1.1 5,108,513 + +0.8 5,108,524 - -1.6 5,108,547 + -0.1 5,108,569 - -0.6 5,108,624 + +0.8 5,108,625 - +1.3 5,108,796 + +0.3 5,108,796 + -0.4 5,108,796 + +0.2 5,108,797 - -1.4 5,108,800 + -1.7 5,108,800 + -0.4 5,108,801 - +1.0 5,108,801 - +0.0 5,108,881 + +0.8 5,108,881 + -0.1 5,108,882 - AO356_22885 0.10 +0.8 5,109,013 - AO356_22885 0.26 +1.0 5,109,015 + AO356_22885 0.27 +1.0 5,109,016 - AO356_22885 0.27 -0.4 5,109,016 - AO356_22885 0.27 -0.5 5,109,057 + AO356_22885 0.32 -0.7 5,109,057 + AO356_22885 0.32 +0.1 5,109,061 + AO356_22885 0.32 -0.2 5,109,062 - AO356_22885 0.32 +2.3 5,109,146 + AO356_22885 0.43 +0.2 5,109,175 - AO356_22885 0.47 +1.0 5,109,231 - AO356_22885 0.53 +0.9 5,109,324 + AO356_22885 0.65 +0.5 5,109,565 + -1.2 5,109,743 + -1.6 5,109,863 + +1.0 5,109,863 + +0.4 5,109,868 + +0.4 5,109,869 - +0.8 5,109,869 - +0.9 5,109,869 - +0.4 5,109,977 + AO356_22890 0.14 +1.2 5,109,985 - AO356_22890 0.14 +0.1 5,110,030 + AO356_22890 0.16 +1.0 5,110,031 - AO356_22890 0.16 +1.7 5,110,084 - AO356_22890 0.19 +0.8 5,110,087 + AO356_22890 0.19 +0.9 5,110,104 + AO356_22890 0.20 -1.9 5,110,132 + AO356_22890 0.21 +0.5 5,110,133 - AO356_22890 0.22 +1.3 5,110,158 + AO356_22890 0.23 +0.7 5,110,246 + AO356_22890 0.27 -0.7 5,110,247 - AO356_22890 0.27 +0.2 5,110,390 + AO356_22890 0.34 -0.0 5,110,391 - AO356_22890 0.34 +0.4 5,110,454 - AO356_22890 0.38 -3.6 5,110,454 - AO356_22890 0.38 +0.8 5,110,457 + AO356_22890 0.38 +0.0 5,110,458 - AO356_22890 0.38 +1.4 5,110,477 - AO356_22890 0.39 +1.6 5,110,477 - AO356_22890 0.39 +0.5 5,110,505 - AO356_22890 0.40 +1.4 5,110,522 - AO356_22890 0.41 +1.1 5,110,522 - AO356_22890 0.41 +0.0
Or see this region's nucleotide sequence